View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13847_low_1 (Length: 380)
Name: NF13847_low_1
Description: NF13847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13847_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 26711685 - 26711334
Alignment:
| Q |
13 |
aatatgatctcaaagtccctgattcatggtcaggaacaatatgggtaagaactggatgtagtggaaaccctaatagtaactttcattgtgcaattggtga |
112 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26711685 |
aatatgatctcaaagtccctgattcatggtcaggcacaatatgggtaagaactggatgtagtggaaaccctaatagtaactttcattgtgctattggtga |
26711586 |
T |
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| Q |
113 |
ttgtggtactaatagtattcattgccattacaaggaaccaaacccacctgcgactcaagtgaaactcaatttagttccaaaaggtggtggtagtagttcc |
212 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26711585 |
ttgtcgtactaataatattcattgccattacaaggaaccacacccacctgtgactcaagtgaaattcaatttagttccaaaaggtggtggtagtagttcc |
26711486 |
T |
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| Q |
213 |
tataaagtggaccttaaagatggttttagtttacctgttactttaacacctttagaatccaaatgccagaaaattatgtgcgatatgaatttgttggatc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
26711485 |
tataaagtggaccttaaagatggttttagtttacctgttacattaacccctttagaatccaaatgcaagaaaatcatgtgcgatatgaatttgttggatc |
26711386 |
T |
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| Q |
313 |
gatgtcctgattggttgggtgtgtatagcgatgaagggagaaaaattgcttg |
364 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
26711385 |
aatgtcctaattggttggctgtgtatagcgatgaagggagaaagattgcttg |
26711334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 26715603 - 26715454
Alignment:
| Q |
13 |
aatatgatctcaaagtccctgattcatggtcaggaacaatatgggtaagaactggatgtagtggaaaccctaatagtaactttcattgtgcaattggtga |
112 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||| |
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| T |
26715603 |
aatatgatctcaaagtccctgattcatggtcgggaacaatatgggtaagaaccggatgtagtggaaaccctaacagtagctttcattgtgctattggtga |
26715504 |
T |
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| Q |
113 |
ttgtggtactaatagtattcattgccattacaaggaaccaaacccacctg |
162 |
Q |
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||| |||||||||| ||||||||||||||||||| ||||| ||||||||| |
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| T |
26715503 |
ttggggtactaataatattcattgccattacaagcaaccacacccacctg |
26715454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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