View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13847_low_3 (Length: 341)

Name: NF13847_low_3
Description: NF13847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13847_low_3
NF13847_low_3
[»] chr3 (12 HSPs)
chr3 (19-325)||(36471242-36471551)
chr3 (22-325)||(36465972-36466269)
chr3 (231-325)||(43861662-43861756)
chr3 (209-325)||(42164874-42164991)
chr3 (209-292)||(50937274-50937358)
chr3 (209-319)||(39131010-39131121)
chr3 (209-325)||(42878764-42878881)
chr3 (252-325)||(48073585-48073657)
chr3 (252-325)||(42164317-42164389)
chr3 (252-326)||(22979585-22979659)
chr3 (252-325)||(42879365-42879437)
chr3 (252-325)||(43862241-43862313)
[»] chr2 (9 HSPs)
chr2 (19-325)||(21191261-21191570)
chr2 (209-325)||(18247667-18247784)
chr2 (209-325)||(14453804-14453922)
chr2 (209-325)||(6321042-6321158)
chr2 (245-325)||(33179914-33179994)
chr2 (252-325)||(6320484-6320557)
chr2 (252-325)||(18248296-18248368)
chr2 (252-292)||(14453278-14453318)
chr2 (209-324)||(15399618-15399734)
[»] chr5 (11 HSPs)
chr5 (192-325)||(29390563-29390696)
chr5 (192-325)||(29389319-29389453)
chr5 (19-160)||(29389441-29389594)
chr5 (209-325)||(3034981-3035098)
chr5 (86-160)||(29390503-29390575)
chr5 (231-325)||(29639686-29639780)
chr5 (209-325)||(5101087-5101204)
chr5 (252-325)||(29640100-29640172)
chr5 (209-317)||(34859218-34859327)
chr5 (209-289)||(8524874-8524955)
chr5 (209-290)||(15525349-15525431)
[»] chr7 (8 HSPs)
chr7 (193-325)||(19064258-19064390)
chr7 (209-325)||(47253792-47253909)
chr7 (209-292)||(42832183-42832267)
chr7 (209-289)||(1600334-1600415)
chr7 (252-325)||(46160408-46160480)
chr7 (252-325)||(47254392-47254464)
chr7 (209-325)||(46159807-46159924)
chr7 (273-325)||(1599770-1599822)
[»] chr6 (4 HSPs)
chr6 (209-325)||(24160291-24160408)
chr6 (238-325)||(13868298-13868385)
chr6 (209-292)||(12503771-12503855)
chr6 (209-324)||(25118882-25118998)
[»] chr4 (13 HSPs)
chr4 (209-317)||(43939118-43939227)
chr4 (252-325)||(8080841-8080913)
chr4 (209-325)||(26919033-26919150)
chr4 (252-325)||(31623529-31623601)
chr4 (209-325)||(43590722-43590839)
chr4 (209-325)||(51942728-51942845)
chr4 (209-292)||(10657164-10657248)
chr4 (209-292)||(10871309-10871393)
chr4 (209-292)||(49647043-49647127)
chr4 (209-319)||(8079732-8079842)
chr4 (252-324)||(43938556-43938627)
chr4 (252-325)||(26918485-26918557)
chr4 (252-325)||(43593966-43594038)
[»] chr8 (9 HSPs)
chr8 (209-325)||(31641039-31641156)
chr8 (209-325)||(35021821-35021938)
chr8 (209-325)||(41670561-41670678)
chr8 (209-292)||(38362880-38362964)
chr8 (252-327)||(26950943-26951017)
chr8 (210-292)||(19141901-19141984)
chr8 (252-327)||(26920226-26920299)
chr8 (255-324)||(3850739-3850808)
chr8 (252-325)||(31640469-31640541)
[»] scaffold0217 (1 HSPs)
scaffold0217 (209-292)||(20176-20260)
[»] chr1 (2 HSPs)
chr1 (209-320)||(43847223-43847335)
chr1 (209-324)||(12768792-12768908)
[»] scaffold0014 (2 HSPs)
scaffold0014 (252-325)||(69842-69914)
scaffold0014 (209-325)||(70514-70631)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 36471242 - 36471551
Alignment:
Q  19 ggtaatggcatgcaaatttgtaacaaccgttcaatttagcccctaaatattttgaaatagcacgatagatttcagatcaagaaactaggattcaatttgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36471242 ggtaatggcatgcaaatttgtaacaaccgttcaatttagcccctaaatattttgaaatagcacgatagatttcagatcaagaaactaggattcaatttgt 36471341  T
Q  119 aatgtagccacctaaattaccaacgataggattctcacgataacagcaggatcaatgtgcctaataacagcatgattctcacgatagtgtaaatcaaatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||    
T  36471342 aatgtagccacctaaattaccaacgataggattctcacgataacagcaggatcaatgtgcctaataacaacaggattctcaccataatgtaaatcaaatc 36471441  T
Q  219 aataagaaatataagtcatgataccggatgtgattttggaaacaa---cgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgat 315  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||   |||||||| |||| ||||||||||||||||| | |||||| |||||||||||    
T  36471442 aataagaaagataagtcgtgatacctgatgtgattttggaaacaacagcgacgattttcacaatgtctggaatcaaacgggcggcagcaattctcacgat 36471541  T
Q  316 aattgaaaac 325  Q
    ||||||||||    
T  36471542 aattgaaaac 36471551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 325
Target Start/End: Complemental strand, 36466269 - 36465972
Alignment:
Q  22 aatggcatgcaaatttgtaacaaccgttcaatttagcccctaaatattttgaaatagcacgatagatttcagatcaagaaactaggattcaatttgtaat 121  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36466269 aatggcatgcaaatttgtaacaaccattcaatttagcccctaaatattttgaaatagcacgatagatttcagatcaagaaactaggattcaatttgtaag 36466170  T
Q  122 gtagccacctaaattaccaacgataggattctcacgataacagcaggatcaatgtgcctaataacagcatgattctcacgatagtgtaaatcaaatcaat 221  Q
    |||| |  |||||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36466169 gtaggc--ctaaattaccgacgataggattctcacgat----gcaggatcaatgtgcctaataacagcatgattctcaccatagtgtaaatcaaatcaat 36466076  T
Q  222 aagaaatataagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattga 321  Q
    |||||| |||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||||||||||||||||||||||     
T  36466075 aagaaagataagtcacgatacctgatgtgattttggaaacaacggcgattctcacgatgtctgaaatcaaacgggcggcagcgattctcacgataattgg 36465976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 43861756 - 43861662
Alignment:
Q  231 aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||||||||||| ||||||||| ||||||||||  |||||||||| ||||||||||||||| |   | || |||||||||||||||||| ||||    
T  43861756 aagtcatgatacctgatgtgattatggaaacaacaccgattctcacaatgtctggaatcaaaaggacgacaacgattctcacgataattggaaac 43861662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 42164874 - 42164991
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||| | |||||| || ||||||| ||||| ||||||||| ||||||||||  |||||||||| |||| |||||||||| |   | || |||||    
T  42164874 aaatcaaatctagaagaaaaatcaagtcatcatacctgatgtgattatggaaacaacaccgattctcacaatgtttggaatcaaaaggacgacaacgatt 42164973  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||||||||    
T  42164974 ctcacgataattgaaaac 42164991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 50937274 - 50937358
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    |||||||||||| |||||| || ||| ||||||||| ||||||||| ||||||||||   ||||||||| |||||||||||||||    
T  50937274 aaatcaaatcaaaaagaaaaatcaagacatgatacctgatgtgattatggaaacaacactgattctcacaatgtctggaatcaaa 50937358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 39131121 - 39131010
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| ||||||||||  |||||||||| ||||||| |||| || |   | || |||||    
T  39131121 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatggaaacaacaccgattctcacaatgtctgaaatctaaaggacgacaacgatt 39131022  T
Q  308 ctcacgataatt 319  Q
    ||||||||||||    
T  39131021 ctcacgataatt 39131010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 42878881 - 42878764
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| | |||  ||||||||| ||||||||||  |||||||||| ||||||||||||||| |   | || |||||    
T  42878881 aaatcaaatcaagaagaaaaatcaagtcacgttacatgatgtgattatggaaacaacaccgattctcacaatgtctggaatcaaaaggacgacaacgatt 42878782  T
Q  308 ctcacgataattgaaaac 325  Q
     |||||||||||| ||||    
T  42878781 gtcacgataattggaaac 42878764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 48073585 - 48073657
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||||||||| ||||||| |||||||||||||||||||||||   |||| | ||| |||||||||||||||||    
T  48073585 ttttggaaacagcgacgat-ctcacgatgtctggaatcaaacggacggcaacaattttcacgataattgaaaac 48073657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 42164389 - 42164317
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||||||||| | |||| |||||||||||||||||||||||   ||||  ||||||||||||||||| ||||    
T  42164389 ttttggaaacaatgccgat-ctcacgatgtctggaatcaaacggacggcaatgattctcacgataattggaaac 42164317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 326
Target Start/End: Original strand, 22979585 - 22979659
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaact 326  Q
    |||||||||||||  |||||||||| ||||||||||||||| |   | || ||||||| |||||||||| |||||    
T  22979585 ttttggaaacaacaccgattctcacaatgtctggaatcaaatggacgacaacgattcttacgataattggaaact 22979659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 42879365 - 42879437
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||||||||| | |||| ||||||||||||| |||||||||   | || |||||||||||||||||| ||||    
T  42879365 ttttggaaacaatggcgat-ctcacgatgtctgaaatcaaacggacgacaacgattctcacgataattggaaac 42879437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 43862241 - 43862313
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||||||||| | |||| || ||||| |||| |||||||||   |||| |||||||||||||||||||||||    
T  43862241 ttttggaaacaatgtcgat-cttacgatctctgaaatcaaacggacggcaacgattctcacgataattgaaaac 43862313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 21191261 - 21191570
Alignment:
Q  19 ggtaatggcatgcaaatttgtaacaaccgttcaatttagcccctaaatattttgaaatagcacgatag--------------atttcagatcaagaaact 104  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||    
T  21191261 ggtaatggcatgcaaatttgtaacaaccattcaatttagcccctaaatattttgaaatagcacgataggattctcatgatagatttcagatcaagaaact 21191360  T
Q  105 aggattcaatttgtaatgtagccacctaaattaccaacgataggattctcacgataacagcaggatcaatgtgcctaataacagcatgattctcacgata 204  Q
    ||||||||||||||||| ||| |  ||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||            
T  21191361 aggattcaatttgtaatctaggc--ctagattagcaacgataggattctcacaataacagcaggatcaatgtgcctaataacagtaggattc-------- 21191450  T
Q  205 gtgtaaatcaaatcaataagaaatataagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcg 304  Q
     |||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||   |||| | ||||||||| |||||||||| | |||||||    
T  21191451 -tgtaaatcaaatcaataagaaatataagttgtgatacctgatgtgattttggaaacaactgagatttttacgatgtctagaatcaaacgggcggcagcg 21191549  T
Q  305 attctcacgataattgaaaac 325  Q
    |||||||||||||||||||||    
T  21191550 attctcacgataattgaaaac 21191570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 18247784 - 18247667
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || ||||||||||| | ||||||||| ||||||||||| |||||||||| ||||||||||||||| |   | ||  ||||    
T  18247784 aaatcaaatcaagaagaaaaatcaagtcatgatatctgatgtgattatggaaacaacgccgattctcacaatgtctggaatcaaaaggacgacaatgatt 18247685  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||| ||||    
T  18247684 ctcacgataattgcaaac 18247667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 14453804 - 14453922
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgatt-ctcacgatgtctggaatcaaacgaggggcagcgat 306  Q
    |||||||||||| |||||| || |||||| ||||||  |||||||| | ||||||||  | ||| ||||| ||||||||||||||| |   | || ||||    
T  14453804 aaatcaaatcaagaagaaaaatcaagtcacgataccttatgtgattattgaaacaacaccaattactcacaatgtctggaatcaaaaggacgacaacgat 14453903  T
Q  307 tctcacgataattgaaaac 325  Q
    |||||||||||||||||||    
T  14453904 tctcacgataattgaaaac 14453922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 6321042 - 6321158
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || ||||||||||| || |||||||| |||||| |||  ||||||| || ||||||||||||||| |   | || |||||    
T  6321042 aaatcaaatcaagaagaaaaatcaagtcatgatatcg-atgtgattatggaaagaacaccgattctgacaatgtctggaatcaaaaggacgacaacgatt 6321140  T
Q  308 ctcacgataattgaaaac 325  Q
    |||| |||||||| ||||    
T  6321141 ctcatgataattggaaac 6321158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 33179994 - 33179914
Alignment:
Q  245 gatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||||||| ||||||||||  ||||||| || ||||||||||||||| |   | || |||||||||||||||||| ||||    
T  33179994 gatgtgattatggaaacaacaccgattctgacaatgtctggaatcaaaaggacgacaacgattctcacgataattggaaac 33179914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 6320557 - 6320484
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||||||||||   |||||||||| ||||||||||||||| |   | || |||||||||||||||||| ||||    
T  6320557 ttttggaaacaaaaccgattctcacaatgtctggaatcaaatggacgacaacgattctcacgataattggaaac 6320484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 18248296 - 18248368
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||||||||| | |||| ||||| ||||||| ||| |||||   |||| |||||||||||||||||||||||    
T  18248296 ttttggaaacaatggcgat-ctcacaatgtctgaaataaaacggacggcaacgattctcacgataattgaaaac 18248368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 14453318 - 14453278
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    |||||||||||||  |||||||||| |||||||||||||||    
T  14453318 ttttggaaacaacatcgattctcacaatgtctggaatcaaa 14453278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 324
Target Start/End: Original strand, 15399618 - 15399734
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || ||||||  ||||| || ||| |  |||||| |||||| ||||||||||| | |||||||||||||  | |  |||||    
T  15399618 aaatcaaatcaaaaagaaaaatcaagtcaccatacctgacgtggtactggaaataacgacaattctcacgatatttggaatcaaacgaatgacgacgatt 15399717  T
Q  308 ctcacgataattgaaaa 324  Q
    ||||||| |||| ||||    
T  15399718 ctcacgaaaattaaaaa 15399734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 192 - 325
Target Start/End: Original strand, 29390563 - 29390696
Alignment:
Q  192 gattctcacgatagtgtaaatcaaatcaataagaaatataagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaa 291  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  29390563 gattctcacgatagtgtaaatcaaatcaataagaaatataagtcgtgatacctgatgtgattttggaaacaacggcgattctcacgatgtctgaaatcaa 29390662  T
Q  292 acgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||| |||| |||||||||||||||||| ||||    
T  29390663 acgagcggcaacgattctcacgataattggaaac 29390696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 192 - 325
Target Start/End: Complemental strand, 29389453 - 29389319
Alignment:
Q  192 gattctcacgatagtgtaaatcaaatcaataagaaatataagtca-tgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatca 290  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||||||| |||  ||||||||| |||||||| |||||    
T  29389453 gattctcacgatagtgtaaatcaaatcaataagaaatataagttggtgatacctgatgtgattttggaaataactgcgattctcatgatgtctgaaatca 29389354  T
Q  291 aacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||| | |||||||||||||||| |||| ||||    
T  29389353 aacgagcgacagcgattctcacgatgattggaaac 29389319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 29389594 - 29389441
Alignment:
Q  19 ggtaatggcatgcaaatttgtaacaaccgttcaatttagcccctaaatattttgaaatag--------------cacgatagatttcagatcaagaaact 104  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||    
T  29389594 ggtaatggcatgcgaatttgtaacaaccattcaatttagcccctaaatattttgaaatagcactataggattctcacgatagatttcagatcaagaaact 29389495  T
Q  105 aggattcaatttgtaatgtagccacctaaattaccaacgataggattctcacgata 160  Q
    ||||||||||||||||| |||   |||| |||| ||||||||||||||||||||||    
T  29389494 aggattcaatttgtaatctag--gcctagattagcaacgataggattctcacgata 29389441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 3035098 - 3034981
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| ||||||||||| |||||||||| |||||||||||| || |   | || |||||    
T  3035098 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatggaaacaacgccgattctcacaatgtctggaatctaaaggatgacaacgatt 3034999  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||| ||||    
T  3034998 ctcacgataattggaaac 3034981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 29390503 - 29390575
Alignment:
Q  86 gatttcagatcaagaaactaggattcaatttgtaatgtagccacctaaattaccaacgataggattctcacgata 160  Q
    ||||||||||||| |||||||||||||||||||||| |||   |||| |||| ||||||||||||||||||||||    
T  29390503 gatttcagatcaaaaaactaggattcaatttgtaatctag--gcctagattagcaacgataggattctcacgata 29390575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 29639780 - 29639686
Alignment:
Q  231 aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||| |||||| ||||||||| ||||||||||  |||||||||| ||||||||||||||| |   |||| ||| |||||||||||||| ||||    
T  29639780 aagtcacgatacctgatgtgattatggaaacaacaccgattctcacaatgtctggaatcaaaaggacggcaacgactctcacgataattggaaac 29639686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 5101087 - 5101204
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| | |||| || |||||| |||||| ||||||||| ||||||||||  |||||||||| |||||| |||||||| |   | || |||||    
T  5101087 aaatcaaatcaagaggaaaaatcaagtcacgatacctgatgtgattatggaaacaacaccgattctcacaatgtctagaatcaaaaggacgacaacgatt 5101186  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||| ||||    
T  5101187 ctcacgataattggaaac 5101204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 29640100 - 29640172
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |   |||| |||||||||||||||||||||||    
T  29640100 ttttggaaacaacgacgat-ctcacgatgtctggactcaaatggacggcaacgattctcacgataattgaaaac 29640172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 317
Target Start/End: Original strand, 34859218 - 34859327
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| ||||||||||   ||| ||||| ||||||||||||||| |   |||| |||||    
T  34859218 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatggaaacaacattgatcctcacaatgtctggaatcaaaaggacggcaacgatt 34859317  T
Q  308 ctcacgataa 317  Q
    ||||||||||    
T  34859318 ctcacgataa 34859327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 8524955 - 8524874
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatc 289  Q
    |||||||||||| |||||| || ||| || |||||| ||||||||| ||||||||||  |||||||||| ||||||||||||    
T  8524955 aaatcaaatcaagaagaaaaatcaagccacgatacctgatgtgattatggaaacaacatcgattctcacaatgtctggaatc 8524874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 15525431 - 15525349
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatca 290  Q
    |||||||||||| |||||| || ||||||||||||  ||||||||| ||||||||||  |||||||||  ||||||| |||||    
T  15525431 aaatcaaatcaagaagaaaaatcaagtcatgatacttgatgtgattatggaaacaacaccgattctcataatgtctgaaatca 15525349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 193 - 325
Target Start/End: Complemental strand, 19064390 - 19064258
Alignment:
Q  193 attctcacgatagtgtaaatcaaatcaataagaaatataagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||| ||||| | ||||||||| ||||||||    
T  19064390 attctcacgatagtgtaaatcaaatcaataagaaatataagttgtgatacctgatgtgattttggaaacaacggcgatttttacgatgtctagaatcaaa 19064291  T
Q  293 cgaggggcagcgattctcacgataattgaaaac 325  Q
    |||| || |||||||||||||||||||| ||||    
T  19064290 cgagcggtagcgattctcacgataattggaaac 19064258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 47253909 - 47253792
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| ||||||||||  |||||||||| ||||||| ||||||| |   | || |||||    
T  47253909 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatggaaacaacaccgattctcacaatgtctgaaatcaaaaggacgacaacgatt 47253810  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||| ||||    
T  47253809 ctcacgataattggaaac 47253792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 42832267 - 42832183
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| ||||||||||  |||||||||| |||||||||||||||    
T  42832267 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatggaaacaacaccgattctcacaatgtctggaatcaaa 42832183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 1600334 - 1600415
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatc 289  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| || |||||||  |||||||||| ||||||||||||    
T  1600334 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatgaaaacaacaccgattctcacaatgtctggaatc 1600415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 46160408 - 46160480
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||||||||| ||| || ||||||||||||| |||||||||   |||| |||||||||| ||||||||||||    
T  46160408 ttttggaaacaatgacaat-ctcacgatgtctgaaatcaaacggacggcaacgattctcactataattgaaaac 46160480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 47254392 - 47254464
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||||||||| | |||| |||||||||||||||||||||||   | || |||||||||||||||||| ||||    
T  47254392 ttttggaaacaatggcgat-ctcacgatgtctggaatcaaacggacgacaacgattctcacgataattggaaac 47254464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 46159924 - 46159807
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||| | || ||||||||||||| ||||||||| ||||||||||    |||||||| |||| || |||||||     | || |||||    
T  46159924 aaatcaaatcaagaagagaaatcaagtcatgatacctgatgtgattatggaaacaacactaattctcacaatgtttgcaatcaaaatgatgacaacgatt 46159825  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||| ||||    
T  46159824 ctcacgataattggaaac 46159807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 1599822 - 1599770
Alignment:
Q  273 tcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||||||||||||||| ||||   |||| |||||||||||||||||| ||||    
T  1599822 tcacgatgtctggaatctaacggatggcaacgattctcacgataattggaaac 1599770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 24160408 - 24160291
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    ||||||| |||| |||||| || ||||||||||||| ||||||||| ||||||||||  |||||||||| ||||||||||||||| |   |||| |||||    
T  24160408 aaatcaattcaagaagaaaaatcaagtcatgatacctgatgtgattatggaaacaacaccgattctcacaatgtctggaatcaaaaggacggcaacgatt 24160309  T
Q  308 ctcacgataattgaaaac 325  Q
    | ||||||||||| ||||    
T  24160308 cacacgataattggaaac 24160291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 13868385 - 13868298
Alignment:
Q  238 gataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||| ||||||||| || |||||||   ||||||||| ||||||||||||||| |   | || |||||||||||||||||||||||    
T  13868385 gatacctgatgtgattatgaaaacaacacagattctcacaatgtctggaatcaaaaggacgacaacgattctcacgataattgaaaac 13868298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 12503855 - 12503771
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    |||||||||||| |||||| || |||||| ||||||  ||||| |  ||||||||||  |||||||||| |||||||||||||||    
T  12503855 aaatcaaatcaagaagaaaaatcaagtcacgatacctaatgtgttaatggaaacaacaccgattctcacaatgtctggaatcaaa 12503771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 324
Target Start/End: Original strand, 25118882 - 25118998
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || ||||||  ||||| || ||| |  |||||| |||||| ||||||||||| | |||||||||||||  | |  |||||    
T  25118882 aaatcaaatcaaaaagaaaaatcaagtcaccatacctgacgtggtactggaaataacgacaattctcacgatatttggaatcaaacgaatgacgacgatt 25118981  T
Q  308 ctcacgataattgaaaa 324  Q
    ||||||| |||||||||    
T  25118982 ctcacgaaaattgaaaa 25118998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 317
Target Start/End: Original strand, 43939118 - 43939227
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || ||||||||||||| ||||||||| ||||||||||  |||||||||| ||||||||||||||| |   | || |||||    
T  43939118 aaatcaaatcaagaagaaaaatcaagtcatgatacctgatgtgattatggaaacaacaccgattctcacaatgtctggaatcaaaaggacgacaacgatt 43939217  T
Q  308 ctcacgataa 317  Q
    ||||||||||    
T  43939218 ctcacgataa 43939227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 8080841 - 8080913
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||||||||||||||||| |||||||||||||||||||||||   |||| | |||||||||||||||||||||    
T  8080841 ttttggaaacaacgacgat-ctcacgatgtctggaatcaaacggatggcaacaattctcacgataattgaaaac 8080913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 26919033 - 26919150
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| ||||||||||   ||||||||| |||| |||||||||| |   | || |||||    
T  26919033 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatggaaacaacactgattctcacaatgtatggaatcaaaaggacgacaacgatt 26919132  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||| ||||    
T  26919133 ctcacgataattggaaac 26919150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 31623601 - 31623529
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||||||||||||||||| ||||||||||||||||||||||     ||| |||||||||||||||||||||||    
T  31623601 ttttggaaacaacgacgat-ctcacgatgtctggaatcaaacagaccgcaacgattctcacgataattgaaaac 31623529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 43590839 - 43590722
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||  |||||| ||||||||| ||||||||||  |||||||||| ||||||||||||||| ||  | ||  ||||    
T  43590839 aaatcaaatcaagaagaaaaatcaagtcgcgatacctgatgtgattatggaaacaacaccgattctcacaatgtctggaatcaaaagaacgacaatgatt 43590740  T
Q  308 ctcacgataattgaaaac 325  Q
     |||||||||||| ||||    
T  43590739 atcacgataattggaaac 43590722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 51942845 - 51942728
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| ||||||||||  ||||| |||| |||| |||||||||| |   | || |||||    
T  51942845 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatggaaacaacaccgattgtcacaatgtatggaatcaaaaggacgacaacgatt 51942746  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||| ||||    
T  51942745 ctcacgataattggaaac 51942728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 10657248 - 10657164
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    |||||||||||| |||||| |  ||||||||||||| ||||||||| ||||||||||  ||| |||||| |||||||||||||||    
T  10657248 aaatcaaatcaagaagaaaaagcaagtcatgatacctgatgtgattatggaaacaacaccgactctcacaatgtctggaatcaaa 10657164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 10871393 - 10871309
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    |||||||||||| |||||| |  ||||||||||||| ||||||||| ||||||||||  ||| |||||| |||||||||||||||    
T  10871393 aaatcaaatcaagaagaaaaagcaagtcatgatacctgatgtgattatggaaacaacaccgactctcacaatgtctggaatcaaa 10871309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 49647127 - 49647043
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| ||||||||||  | |||||||| |||||||||||||||    
T  49647127 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatggaaacaacaccaattctcacaatgtctggaatcaaa 49647043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 8079842 - 8079732
Alignment:
Q  209 aaatcaaatcaataagaaatataagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattc 308  Q
    ||||||||| || ||||||   ||||||  ||||| |||||||||  ||||||||| |  |||||||| ||||||||||||||| |   |||||||||||    
T  8079842 aaatcaaataaagaagaaaatcaagtcacaatacctgatgtgattacggaaacaacaataattctcacaatgtctggaatcaaaaggttggcagcgattc 8079743  T
Q  309 tcacgataatt 319  Q
    |||||||||||    
T  8079742 tcacgataatt 8079732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 43938627 - 43938556
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaa 324  Q
    |||||||||||||||| | ||||||||||| |||||||||||    |||| | ||||||||||||||||||||    
T  43938627 ttttggaaacaacgac-agtctcacgatgtttggaatcaaacagacggcaactattctcacgataattgaaaa 43938556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 26918557 - 26918485
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||||||||| | |||| ||||||||||||| |||| ||||   |||| |||||||||||||||||| ||||    
T  26918557 ttttggaaacaatggcgat-ctcacgatgtctgtaatctaacggacggcaacgattctcacgataattggaaac 26918485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 43593966 - 43594038
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    |||||||||||| | |||| |||||||||| ||||||||||||   |||| |||||| ||||||||||| ||||    
T  43593966 ttttggaaacaatggcgat-ctcacgatgtttggaatcaaacggacggcaacgattcgcacgataattggaaac 43594038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 31641039 - 31641156
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| |||||| |||  |||||||||| ||||||||||||||| |   || ||||| |    
T  31641039 aaatcaaatcaagaagaaacatcaagtcacgatacctgatgtgattatggaaataacaccgattctcacaatgtctggaatcaaaaggttggaagcgaat 31641138  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||| ||||    
T  31641139 ctcacgataattggaaac 31641156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 35021821 - 35021938
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| ||| || || |||||| |||||| ||||||||| ||||||||||  |||||||||| |||| |||||||||| |   |||| |||||    
T  35021821 aaatcaaatcaagaagcaaaatcaagtcacgatacctgatgtgattatggaaacaacaccgattctcacaatgtttggaatcaaaaggacggcaacgatt 35021920  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||| ||||    
T  35021921 ctcacgataattggaaac 35021938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 41670678 - 41670561
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| |||||| ||||| ||| ||||||||||   ||||||||| ||||||||||||||| |   | || |||||    
T  41670678 aaatcaaatcaagaagaaaaattaagtcacgatacctgatgttattatggaaacaacactgattctcacaatgtctggaatcaaaaggacgacaacgatt 41670579  T
Q  308 ctcacgataattgaaaac 325  Q
    ||||||||||||| ||||    
T  41670578 ctcacgataattggaaac 41670561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 38362964 - 38362880
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    |||||||||||| |||||| || ||||| ||||| | ||||||||| ||||||||||  |||||||||| |||||||||||||||    
T  38362964 aaatcaaatcaaaaagaaaaatcaagtcgtgatatctgatgtgattatggaaacaacaccgattctcacaatgtctggaatcaaa 38362880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 26950943 - 26951017
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaactg 327  Q
    |||||||||||||| |||| |||||||||| ||||||||||||   |||| |||||||||||||||||| ||||||    
T  26950943 ttttggaaacaacggcgat-ctcacgatgtttggaatcaaacggacggcaacgattctcacgataattggaaactg 26951017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 19141901 - 19141984
Alignment:
Q  210 aatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    ||||||||||| |||||| || ||| || |||||| || |||||| ||||||||||  |||||||||| |||||||||||||||    
T  19141901 aatcaaatcaagaagaaaaatcaagacacgatacctgacgtgattatggaaacaacatcgattctcacaatgtctggaatcaaa 19141984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 26920226 - 26920299
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaactg 327  Q
    |||||||||||||||| || |||||||||||||||||||||||   |||| ||||| |||||||||||| ||||||    
T  26920226 ttttggaaacaacgaccat-ctcacgatgtctggaatcaaacggacggcaacgatt-tcacgataattggaaactg 26920299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 3850739 - 3850808
Alignment:
Q  255 tggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaa 324  Q
    |||||| |||||| ||||||||||| | |||||||||||||  | || |||||||||||| |||||||||    
T  3850739 tggaaataacgacaattctcacgatatttggaatcaaacgaacgacaacgattctcacgaaaattgaaaa 3850808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 31640541 - 31640469
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||||||||| ||||||  ||||||||||||| ||||||||||  |||| ||||| ||||||||||| |||||    
T  31640541 ttttggaaacagcgacgac-ctcacgatgtctgaaatcaaacgaacggcaacgattttcacgataatttaaaac 31640469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 20176 - 20260
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaa 292  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| ||||||||||  |||||||||| |||||||||||||||    
T  20176 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatggaaacaacaccgattctcacaatgtctggaatcaaa 20260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 43847223 - 43847335
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| |||||| ||||||||| ||||||||||  ||||| |||| || | |||||||||| |   | || |||||    
T  43847223 aaatcaaatcaagaagaaaaatcaagtcacgatacctgatgtgattatggaaacaacaccgattttcacaatttttggaatcaaaaggacgacaacgatt 43847322  T
Q  308 ctcacgataattg 320  Q
    |||||||||||||    
T  43847323 ctcacgataattg 43847335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 324
Target Start/End: Original strand, 12768792 - 12768908
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || ||||||  ||||  |||||| || |||||| |||| | ||||||||||| | |||||||||||||  | |  |||||    
T  12768792 aaatcaaatcaaaaagaaaaatcaagtcaccatacttgatgtggttctggaaataacggcaattctcacgatatttggaatcaaacgaacgacgacgatt 12768891  T
Q  308 ctcacgataattgaaaa 324  Q
    ||||||| |||||||||    
T  12768892 ctcacgaaaattgaaaa 12768908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 69914 - 69842
Alignment:
Q  252 ttttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgattctcacgataattgaaaac 325  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||   |||   ||||||||||||||||||||||    
T  69914 ttttgaaaacagcgacgat-ctcacgatgtctggaatcaaacggacggcgatgattctcacgataattgaaaac 69842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 70514 - 70631
Alignment:
Q  209 aaatcaaatcaataagaaatat-aagtcatgataccggatgtgattttggaaacaacgacgattctcacgatgtctggaatcaaacgaggggcagcgatt 307  Q
    |||||||||||| |||||| || |||||| ||||||  || || || || |||||||   ||||||||| ||||||||||||||| |   ||||| ||||    
T  70514 aaatcaaatcaaaaagaaaaatcaagtcacgatacctaatatggttatgaaaacaacactgattctcacaatgtctggaatcaaaaggaaggcagtgatt 70613  T
Q  308 ctcacgataattgaaaac 325  Q
    || || ||||||||||||    
T  70614 cttacaataattgaaaac 70631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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