View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13847_low_4 (Length: 304)
Name: NF13847_low_4
Description: NF13847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13847_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 7563099 - 7563249
Alignment:
| Q |
22 |
ccgatgaagctgccaaagtttacggaggaggaggaccgcaatggagggagttgttgggaaatggtgaggccgttaaggcggaggtggacgattatgaggg |
121 |
Q |
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| T |
7563099 |
ccgatgaagctgccaaagtttacggaggaggaggaccgcgatggagggagttgttgggaaatggtgaggccgttaaggcggaggtggacaattatgaggg |
7563198 |
T |
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| Q |
122 |
ctttgaagacttcatttggatgcattcatattgtttaatttaatttaggag |
172 |
Q |
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| T |
7563199 |
ctttgaaaacttcatttggatgcattcatattgtttagtttaatttaggag |
7563249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 7558968 - 7559109
Alignment:
| Q |
22 |
ccgatgaagctgccaaagtttacggaggaggaggaccgcaatggagggagttgttgggaaatggtgaggccgttaaggcggaggtggacgattatgaggg |
121 |
Q |
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| T |
7558968 |
ccgatgaagctgccaaagtttacggaggaggaggactgcaatggagggagttgttgggaaatggtgaggccgttaaggcggaggtggacaattatgaggg |
7559067 |
T |
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| Q |
122 |
ctttgaagacttcatttggatgcattcatattgtttaattta |
163 |
Q |
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| T |
7559068 |
ctttgaaggcttcatttggatgcattcatattgtttagttta |
7559109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 7568157 - 7568301
Alignment:
| Q |
20 |
aaccgatgaagctgccaaagtttacggaggaggaggaccgcaatggagggagttgttgggaaatggtgaggccgttaaggcggaggtggacgattatgag |
119 |
Q |
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| T |
7568157 |
aaccgatgaagctgccgaagtttacggagcaggaggaagttggtggagagagtcgttgggaaatggtgagaccgttaagacggaggtggacgattatgag |
7568256 |
T |
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| Q |
120 |
ggctttgaagacttcatttggatgcattcatattgtttaatttaa |
164 |
Q |
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| T |
7568257 |
tgctttgaaggcttcgtttggatgcattcacattctttagtttaa |
7568301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 7559167 - 7559254
Alignment:
| Q |
211 |
atgttgaaattcattgatttaacaactgattttgtacattatataattcgtcagattgatattttgtgtctcattgaaaatattcttc |
298 |
Q |
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| T |
7559167 |
atgttggaattcattgatttaacaactgattttgtacattatataattagtcagattcatattatgtgtctcattgaaaatattcttc |
7559254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 7563299 - 7563386
Alignment:
| Q |
211 |
atgttgaaattcattgatttaacaactgattttgtacattatataattcgtcagattgatattttgtgtctcattgaaaatattcttc |
298 |
Q |
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| T |
7563299 |
atgttggaattcattgatttaacaactgattttatacattatataattcgtcagattcgtattatgtgtatcattgaaaatattcttc |
7563386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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