View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13848_high_3 (Length: 363)
Name: NF13848_high_3
Description: NF13848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13848_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 4761328 - 4761648
Alignment:
| Q |
16 |
tcatgactaagtggaaccagaaccatttttcttattatatcttaccatgcatagatttgttaacaatttttgttaatgtttgttacaatatgttaatctc |
115 |
Q |
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| T |
4761328 |
tcatgactaagtggaaccagaatcatttttcttattatatcttaccatgcatagatttgttaacaatttttgttaatgtttgttacaatatgttaatctc |
4761427 |
T |
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| Q |
116 |
accatttacgtaacagaaaatatcaataggcggggtttgttggtaaaccataataattaataattacattataattaaggttgcgtttatacccaattgt |
215 |
Q |
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| T |
4761428 |
accatttacgtaacagaaaatatcaataggcagggtttattggtaaaccataataattaataattacattataattaaggttgcgtttatacccaattgt |
4761527 |
T |
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| Q |
216 |
tctatgaaaaggacatattcatacacgcaattgaaatcgttaccacaagacaagacaacatcattcataacacaatggttcttttcagtcctattaaaat |
315 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761528 |
tcaatgaaaaggac--attcatacacgcaattgaaatcgttaccacaagacaagacaacatcattcataacacaatggttcttttcagtcctattaaaat |
4761625 |
T |
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| Q |
316 |
taaattgaggtacaagaaacatt |
338 |
Q |
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||||||||||||||||||||||| |
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| T |
4761626 |
taaattgaggtacaagaaacatt |
4761648 |
T |
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