View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13848_high_5 (Length: 322)
Name: NF13848_high_5
Description: NF13848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13848_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 26 - 321
Target Start/End: Complemental strand, 43065732 - 43065438
Alignment:
| Q |
26 |
tatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactnnnnnnnnncattacgataatataataatggcatggtaa |
125 |
Q |
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| T |
43065732 |
tatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactaaaaaaaa-cattacgataatataataatggcatggtaa |
43065634 |
T |
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| Q |
126 |
tgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcgactattttaaaactagcgattcataaatnnnnnnncgataggattcagaattgc |
225 |
Q |
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| T |
43065633 |
tgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcaactattttaaaactagcgattcataaataaaaaaacgataggattcagaattgc |
43065534 |
T |
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| Q |
226 |
gattaaacacgtgcatgaatagaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcga |
321 |
Q |
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| T |
43065533 |
gattaaacatgtgcatgaatcgaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcga |
43065438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 43047402 - 43047473
Alignment:
| Q |
247 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaat |
318 |
Q |
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| T |
43047402 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaat |
43047473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 43047239 - 43047289
Alignment:
| Q |
106 |
atataataatggcatggtaatgttaaaatgcaagaatgaagtatatatgag |
156 |
Q |
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| T |
43047239 |
atataataatggcatggtaatgttaaaatgcatgaatgaagaatgtatgag |
43047289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 42159055 - 42159107
Alignment:
| Q |
252 |
acaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaata |
304 |
Q |
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| T |
42159055 |
acaaaagcattattatgtaatcgatcaaagatgtaaagtaaagtacacgaata |
42159107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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