View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13848_low_1 (Length: 413)
Name: NF13848_low_1
Description: NF13848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13848_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 47 - 398
Target Start/End: Original strand, 6432457 - 6432808
Alignment:
| Q |
47 |
ttagtatgtataaactttccnnnnnnnttggaatatgtggaaggtactatatatatttgtgttggtgaagaagaaaggggtaagagcttggacagattat |
146 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6432457 |
ttagtatgtataaactttccaaaaaaattggaatatgtggaaggtactatatatatttgggttggtgaagaagaaaggggtaagagcttggacagattat |
6432556 |
T |
|
| Q |
147 |
gacattcatattggaaatacaacgacaaacaaggttgaatttgctcatagttagttaaaaaagaatctagcagataatatggtgatatatgtaaaaattg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6432557 |
gacattcatattggaaatacaacgacaaacaaggttgaatttgctcatagttagttaaaaaagaatctagcagataatatggtgatatatgtaaaaattg |
6432656 |
T |
|
| Q |
247 |
ggtttcaaataacacgatagcacacttagatacaagtctagtttgaaaagagcatgatttcaatggaacacagaagatgtaaaaatcatgttcatatata |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6432657 |
ggtttcaaataacacgatagcacacttagatacaagtctagtttgaaaagaacatgatttcaatggaacacaaaagatgtaaaaatcatgttcatatata |
6432756 |
T |
|
| Q |
347 |
taatctgaaatgggtaaacacacctctaggtgtgtaggacttcgttcctctt |
398 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6432757 |
taatctggaatgggtaaacacacctctaggtgtgtaggacttcgttcctctt |
6432808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University