View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_high_12 (Length: 461)
Name: NF13849_high_12
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 164 - 446
Target Start/End: Original strand, 13615374 - 13615656
Alignment:
| Q |
164 |
tttttcatcttctccttaaacccttttcatctctctctcccaactctctccagcaagatcttccttcacagatcttcaccattctctcacaaccccaatg |
263 |
Q |
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| T |
13615374 |
tttttcatcttctccttaaacccttttcatctctctctcccaactctctccaacaagatcttccttcacagatcttcaccattctcttacaaccccaatg |
13615473 |
T |
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| Q |
264 |
gcgtaaaaatccatcctttaacaccttaatcccatctttaaccccaacccatctctcttctctcttcaacaaccccaatctccaccctctcaccgcccta |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13615474 |
gcgtaaaaatccatcctttaacaccttaatcccatctttaaccccaactcatctctcttctctcttcaacaaccccaatctccaccctctcaccgcccta |
13615573 |
T |
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| Q |
364 |
aacttcttcaaatggatccattaccaacatggtttcatccacaccgttcattcctaccaacctcttcttttcattcttgttcg |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13615574 |
aacttcttcaaatggatccattaccaacatggtttcatccacaccgttcattcctaccaacctcttcttttcattcttgttcg |
13615656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 13615235 - 13615351
Alignment:
| Q |
16 |
ataacaaaaccctcttccaaatgaataatacataaaccccaacacaaaacaaaaccctttcttcttgttgatggcttttaaatgagaaaatctaaacccc |
115 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13615235 |
ataacaaaaccctcttccaaatgaata---cataaaccccaacacaaaacaaaaccctttcttcttgttgatggcttttaaatgagaaaatctaagcccc |
13615331 |
T |
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| Q |
116 |
ttttcacccttctccaccat |
135 |
Q |
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| T |
13615332 |
ttttcactcttctccaccat |
13615351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 21748149 - 21748036
Alignment:
| Q |
17 |
taacaaaaccctcttccaaatgaataatacataaaccccaacacaaaacaaaaccctttcttcttgttgatggcttttaaatgagaaaatctaaacccct |
116 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21748149 |
taacaaaaccctcttccaaatgaaca---cataaaccccaacacaaaacaaaaccctttcttcttgttgatgacttttaaatgagaaaatctaaacccct |
21748053 |
T |
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| Q |
117 |
tttcacccttctccacc |
133 |
Q |
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|||||| |||||||||| |
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| T |
21748052 |
tttcactcttctccacc |
21748036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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