View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_high_17 (Length: 396)
Name: NF13849_high_17
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_high_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 51311301 - 51310922
Alignment:
| Q |
17 |
ataagatgtgtgtaaacaatttttacactgatagtatccattaattctactttatattatcattcaatgtttttatttgtttggcatttccttggataag |
116 |
Q |
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| T |
51311301 |
ataagatgtgtgtaaacaatttttacactgatagtatccattaattctactttatattatcattcaatgttcttatttgtttggcatttccttggataag |
51311202 |
T |
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| Q |
117 |
caacatttgatacaagttgaaaacagaagcaaaggaatttaagtcaataaacacaattagcatagcacagcatgtcaaagtgagccatcttggtcatatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51311201 |
caacatttgatacaagttgaaaacagaagcaaaggaatttaagtcaataaacacaattagcatagcacagcatgtcaaagtgagccatcttggtcatatc |
51311102 |
T |
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| Q |
217 |
atttaagttcaagtttatcataatcaattaatcattcatatatagtagcaaaattttattggtgtctccattcataatacaatgaaatcattgcttcctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51311101 |
atttaagttcaagtttatcataatcaattaatcattcatatatagtagcaaaattttattggtgtctccattcataatacaatgaaatcattgcttcctc |
51311002 |
T |
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| Q |
317 |
aattcacataaccaaattttgacagccttacctttggcaacaaagcagccagtgtttttcctatcaatcctgagtggacc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51311001 |
aattcacataaccaaattttgacagccttacctttggcaacaaagcagccagtgtttttcctatcaatcctgagtggacc |
51310922 |
T |
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