View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13849_high_18 (Length: 394)

Name: NF13849_high_18
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13849_high_18
NF13849_high_18
[»] chr5 (3 HSPs)
chr5 (1-377)||(8758316-8758693)
chr5 (330-369)||(35732279-35732318)
chr5 (328-368)||(18345817-18345857)
[»] chr1 (3 HSPs)
chr1 (327-375)||(8296289-8296337)
chr1 (327-372)||(18280395-18280440)
chr1 (323-376)||(27829942-27829995)
[»] chr7 (4 HSPs)
chr7 (328-377)||(25583995-25584044)
chr7 (334-372)||(34383265-34383303)
chr7 (328-369)||(37757424-37757465)
chr7 (328-369)||(37763172-37763213)
[»] chr4 (1 HSPs)
chr4 (328-377)||(9521820-9521869)
[»] chr3 (1 HSPs)
chr3 (328-377)||(26868922-26868971)


Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 8758693 - 8758316
Alignment:
Q  1 aatcattcaaagtattgtttttaggatttttctatctggtccaacgcataagagttgtagataattgtatacagcaaagtctgctacaccttactatata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758693 aatcattcaaagtattgtttttaggatttttctatctggtccaacgcataagagttgtagataattgtatacagcaaagtctgctacaccttactatata 8758594  T
Q  101 ctttgacgccaacactttaaagtgttctcataagataaaaa-gttaaatggtcatttttgccaagtttttagggtaagtttaaatcttaacttgacatag 199  Q
    ||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8758593 ctttgacgccaacactttacattgttctcataagataaaaaagttaaatggtcatttttgccaagtttttagggtaagtttaaatctaaacttgacatag 8758494  T
Q  200 acttatatggaacactagttgcaaagaaagggaagggttgtataacatttaggttaagaaaacaattcactagacagttgaaaatgagtctgcacaactg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758493 acttatatggaacactagttgcaaagaaagggaagggttgtataacatttaggttaagaaaacaattcactagacagttgaaaatgagtctgcacaactg 8758394  T
Q  300 aagaagtaaattgattgtatactgatttggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatc 377  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758393 aaaaagtaaattgattgtatactgatttggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatc 8758316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 35732279 - 35732318
Alignment:
Q  330 ctcctctaaagtgaacaactcacattagagtgtaaagtga 369  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  35732279 ctcctttaaagtgaacaactcactttagagtgtaaagtga 35732318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 18345857 - 18345817
Alignment:
Q  328 ggctcctctaaagtgaacaactcacattagagtgtaaagtg 368  Q
    |||||||||||||||| ||| |||| |||||||||||||||    
T  18345857 ggctcctctaaagtgagcaattcactttagagtgtaaagtg 18345817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 8296337 - 8296289
Alignment:
Q  327 tggctcctctaaagtgaacaactcacattagagtgtaaagtgagtatta 375  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8296337 tggctcctctaaagtgagcaactcactttagagtgtaaagtgagtatta 8296289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 18280395 - 18280440
Alignment:
Q  327 tggctcctctaaagtgaacaactcacattagagtgtaaagtgagta 372  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||    
T  18280395 tggctcctctaaagtgagcaactcactttagagtgtaaagtgagta 18280440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 27829942 - 27829995
Alignment:
Q  323 gatttggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattat 376  Q
    |||||| ||||| |||||||||||| |||| |||||| ||| ||||||||||||    
T  27829942 gatttgactcctgtaaagtgaacaattcactttagagagtatagtgagtattat 27829995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 25583995 - 25584044
Alignment:
Q  328 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatc 377  Q
    ||||| |||||||||| |||||||| ||||||||||||||||||| ||||    
T  25583995 ggctcttctaaagtgagcaactcactttagagtgtaaagtgagtaatatc 25584044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 34383265 - 34383303
Alignment:
Q  334 tctaaagtgaacaactcacattagagtgtaaagtgagta 372  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  34383265 tctaaagtgaacaactcactttagagtctaaagtgagta 34383303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 37757424 - 37757465
Alignment:
Q  328 ggctcctctaaagtgaacaactcacattagagtgtaaagtga 369  Q
    |||||||||||| ||| |||||||| ||||||||||||||||    
T  37757424 ggctcctctaaaatgagcaactcactttagagtgtaaagtga 37757465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 37763172 - 37763213
Alignment:
Q  328 ggctcctctaaagtgaacaactcacattagagtgtaaagtga 369  Q
    |||||||||||| ||| |||||||| ||||||||||||||||    
T  37763172 ggctcctctaaaatgagcaactcactttagagtgtaaagtga 37763213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 9521820 - 9521869
Alignment:
Q  328 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatc 377  Q
    ||||||||||||||||| || |||| ||||||||||||||||||| ||||    
T  9521820 ggctcctctaaagtgaataattcactttagagtgtaaagtgagtaatatc 9521869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 26868971 - 26868922
Alignment:
Q  328 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatc 377  Q
    ||||||||||||| || |||||||| ||||| |||||| |||||||||||    
T  26868971 ggctcctctaaagcgagcaactcactttagaatgtaaaatgagtattatc 26868922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University