View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13849_high_22 (Length: 346)

Name: NF13849_high_22
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13849_high_22
NF13849_high_22
[»] chr8 (2 HSPs)
chr8 (207-330)||(32542521-32542650)
chr8 (12-45)||(32542661-32542694)
[»] chr7 (1 HSPs)
chr7 (207-244)||(9985685-9985722)
[»] chr4 (1 HSPs)
chr4 (212-272)||(34929933-34929993)
[»] chr3 (1 HSPs)
chr3 (212-244)||(24889622-24889654)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 330
Target Start/End: Complemental strand, 32542650 - 32542521
Alignment:
Q  207 aaaaactattttgatattttatacaacttgtatttgaggcaacatgttatgttgtggtttagtgagt------aattttagtttttgtcatgtcgtttgt 300  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||      |||||| ||||||||||| ||||||||    
T  32542650 aaaaactattttaatattttatacaacttgtatttggggcaacatgttatgttgtggtttagtgagtcacataaatttttgtttttgtcatatcgtttgt 32542551  T
Q  301 cctccagttttataatcaaacacaatataa 330  Q
    |||||||||||||||| |||||||||||||    
T  32542550 cctccagttttataataaaacacaatataa 32542521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 32542694 - 32542661
Alignment:
Q  12 agataatactgccgttgaaaaaccagcgtcttgt 45  Q
    |||||||||| |||||||||||||||||||||||    
T  32542694 agataatacttccgttgaaaaaccagcgtcttgt 32542661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 9985722 - 9985685
Alignment:
Q  207 aaaaactattttgatattttatacaacttgtatttgag 244  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  9985722 aaaaactattttgatattttagacaacttgtacttgag 9985685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 34929933 - 34929993
Alignment:
Q  212 ctattttgatattttatacaacttgtatttgaggcaacatgttatgttgtggtttagtgag 272  Q
    |||||||||||||||| ||||||||||| || ||||| | ||| || |||||||| |||||    
T  34929933 ctattttgatattttagacaacttgtatatggggcaaaaagttgtgctgtggtttggtgag 34929993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 24889654 - 24889622
Alignment:
Q  212 ctattttgatattttatacaacttgtatttgag 244  Q
    |||||||||||||||||||||||| ||||||||    
T  24889654 ctattttgatattttatacaacttatatttgag 24889622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University