View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_high_24 (Length: 318)
Name: NF13849_high_24
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 40 - 304
Target Start/End: Original strand, 48083010 - 48083278
Alignment:
| Q |
40 |
atgtacttcttgatgaa----gctagttgcattatttgatcatggtaactatgataccttgtcaaaacaaaaatgtgctaactttgataaattacattaa |
135 |
Q |
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| T |
48083010 |
atgtacttcttgatgaacctagctagttgcattatttgatcatggtaactttgataccttgtccaaacaaaaatgtgctaactttgataaattacattaa |
48083109 |
T |
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| Q |
136 |
ttcagtcagtgtacatgtacgagttaagaaagtatattgtcaagaagtggtagtaaaaataaatgtccatgtttgtctgtagttatgatgaagaataact |
235 |
Q |
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| T |
48083110 |
ttcagtcagtgtacatgtacgagttaagcaagtatattgtcaagaagtggtagtaaaaataaatgtccatgtttgtctgtagttatgatgaagaataaat |
48083209 |
T |
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| Q |
236 |
ctgactgagagtcattttaaactctggctacattggcggctagaaattacatgtacttgaagttagatg |
304 |
Q |
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| T |
48083210 |
ctgattgagagtcattttaaactctggctacattggcggctagaaattacatgtacttgaagttagatg |
48083278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 48065786 - 48065872
Alignment:
| Q |
218 |
ttatgatgaagaataactctgactgagagtcattttaaactctggctacattggcggctagaaattacatgtacttgaagttagatg |
304 |
Q |
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| T |
48065786 |
ttatgatgaagaataaatctgactgagagtcattttaaactctggctacattggcggctagaaattacatgtacttgaagttagatg |
48065872 |
T |
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