View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_high_3 (Length: 596)
Name: NF13849_high_3
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 13 - 580
Target Start/End: Complemental strand, 43339813 - 43339246
Alignment:
| Q |
13 |
cacagacaacattgtcggtgaacatctcttattacttcccttctccgcaattccactctagctggcagcctgctccaaatctgcgaagctgctgccacaa |
112 |
Q |
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| T |
43339813 |
cacacacaacattgtcggtgaacatctcttattacttcccttctccgcaattccactctagttggcagcctgctccaaatctgcgaagctgctgccacaa |
43339714 |
T |
|
| Q |
113 |
taatcttcatcatattcagcatcacggaacaaatttgacagcaccaaatagaannnnnnnncaccaagaaccctgctccttcgtcgggcagccagcagaa |
212 |
Q |
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| T |
43339713 |
taatcttcatcatattcagcatcacggaacaaatttgacagcaccaaatagaattttttttcaccaagaaccctgctccttcgtcgggcagccagcagaa |
43339614 |
T |
|
| Q |
213 |
ggtatcagaaacagatggtcgcggctgcacctgcagaatttcctactgcaaaacagatggtccggttgcaaatttttggaccaattccatctccaaatcc |
312 |
Q |
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| T |
43339613 |
ggtatcagaaacagatggtcgcggctgcacctgcagaatttcctactgcaaaacagatggtccggttgcaaatttttggaccaattccatctccaaatcc |
43339514 |
T |
|
| Q |
313 |
acatattatctcaccaacatcccatgtcggacaccttaacatctctgttagaaaccgcactgaataaatgagggaatcacacacagaatggttgttctct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43339513 |
acatattatctcaccaacatcccatgtcggacaccttaacatctctgttagaaaccgcactgaataaatgagggaatcacacacagaatggttgttctct |
43339414 |
T |
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| Q |
413 |
gatccaccaatctttcaaaaagagatattttccccgttttctactacttttttaacaacatcggaaaactaatttaattccaattcatcctttttaagca |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43339413 |
gatccaccaatctttcaaaaagagatattttccccgttttctactacttttttaacaacatcggaaaactaatttaattccaattcatcctttttaagca |
43339314 |
T |
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| Q |
513 |
ttaatcacaagtctcgccaccacataatctaaatacgagtattgaagaatatatggagtccaaatatc |
580 |
Q |
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| T |
43339313 |
ttaatcacaagtctcgccaccacataatctaaatacgagtattgaagaatatatggagtccaaatatc |
43339246 |
T |
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