View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_high_9 (Length: 481)
Name: NF13849_high_9
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 31899684 - 31899999
Alignment:
| Q |
20 |
aaggttgcactctggtaataattaatcatgtttgacatatataattacatattctaataattaattagtactatatgctgctggtctttgtttgttaatt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31899684 |
aaggttgcactctggtaataattaatcatgtttgacata----attacatattctaataattaattagtactatatgctgctgatctttgtttgttaatt |
31899779 |
T |
|
| Q |
120 |
ttgcagcctaaggataaactttataaacctgacaagaacaaatttgtgaactataggacgcccttgtgtgatgtcgtccagaaaaaacgaaagagtgagt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
31899780 |
ttgcagcctaaggataaactttataaacctgacaagaacaaatttgtgaactatgggacgcctttgtgtgatacagtccagaaaaaacgaaagagtgagt |
31899879 |
T |
|
| Q |
220 |
cattgccatgtgagtttcaaaaagaatatgtagac----tctcttcaagctgatggatacctagtaaaatacagtattctgggatctgcactgacattcg |
315 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
31899880 |
cattgccatgtgagtttcaaaaagaatatgtagactcggtctcttcaagatgatggatacctagtaaaagacagtattctgggatctgcactgacattag |
31899979 |
T |
|
| Q |
316 |
ggtgagttacttgcaccaaa |
335 |
Q |
| |
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||| |||||||||||||||| |
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| T |
31899980 |
ggtcagttacttgcaccaaa |
31899999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 886176 - 886445
Alignment:
| Q |
20 |
aaggttgcactctggtaataattaatcatgtttgacatatataattacatattctaataattaatta----gtactatatgctgctggtctttgtttgtt |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||| | ||||||||||| |
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| T |
886176 |
aaggttgcactatggtaataattaatcatgtttgacatat----ttacat--tctaataattaattaattagtactatatgcttat---ctttgtttgtt |
886266 |
T |
|
| Q |
116 |
aattttgcagcctaaggataaactttataaacctgacaagaacaaatttgtgaactataggacgcccttgtgtgatgtcgtccagaaaaaacgaaagagt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||||| || | | |
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| T |
886267 |
aattttgcagcctaaggataaactttataaacctgacaaaaacaaatttgtgaaatatgggacgcccttgtgtgatgcagtccagaaaaaaaataaaaat |
886366 |
T |
|
| Q |
216 |
gagtcattgccatgtgagtttcaaaaagaatatgtagactctcttcaagctgatggatacctagtaaaatacagtattc |
294 |
Q |
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|||||| ||| ||||||||||||| |||||||||||||| |||||| | ||| ||||||||| || || ||||||||| |
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| T |
886367 |
gagtcagtgctatgtgagtttcaagaagaatatgtagacaatcttcacgttgagggatacctaatagaagacagtattc |
886445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 344 - 472
Target Start/End: Original strand, 887238 - 887369
Alignment:
| Q |
344 |
gtctatagacgatgtcagaaaagactatttgaagcctataatattgagcttcctaaacga---tgtgaagtttgaattactagttgaacattatataacc |
440 |
Q |
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|||||||||| | || || ||||| |||||||||||||||||||||||| || |||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
887238 |
gtctatagaccaagtgagcaaagattatttgaagcctataatattgagcatcacaaacaacaatgtgaagtttgaattacaagttgaacattatataacc |
887337 |
T |
|
| Q |
441 |
ctctcggtgagcaccttttcattaagctacct |
472 |
Q |
| |
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||||||||||||||||||| | ||||||||| |
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| T |
887338 |
ctctcggtgagcacctttttgtgaagctacct |
887369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 31660236 - 31660348
Alignment:
| Q |
25 |
tgcactctggtaataattaatcatgtttgacatatataattacat-attctaataattaattagtactatatgctgctggtctttgtttgttaattttgc |
123 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| || | ||||||| ||||||||||| |
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| T |
31660236 |
tgcactatggtaataattaatcatgtttgacata----attacattaatctaataattaattagtactatatgttgat---ctttgttggttaattttgc |
31660328 |
T |
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| Q |
124 |
agcctaaggataaactttat |
143 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
31660329 |
agcctagggataaactttat |
31660348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 31936143 - 31936038
Alignment:
| Q |
32 |
tggtaataattaatcatgtttgacatatataattacat-attctaataattaattagtactatatgctgctggtctttgtttgttaattttgcagcctaa |
130 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| || | ||||||| ||||||||||||||||| |
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| T |
31936143 |
tggtaatcattaatcatgtttgacata----attacattaatctaataattaattagtactatatgttgat---ctttgttggttaattttgcagcctag |
31936051 |
T |
|
| Q |
131 |
ggataaactttat |
143 |
Q |
| |
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||||||||||||| |
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| T |
31936050 |
ggataaactttat |
31936038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 470
Target Start/End: Complemental strand, 31875106 - 31874974
Alignment:
| Q |
338 |
atttaggtctatagacgatgtcagaaaagactatttgaagcctataatattgagcttcctaaacgatgtgaagtttgaattactagttgaacattatata |
437 |
Q |
| |
|
||||| |||||||||||| || || |||||||||||||||||||||||| |||| ||| |||| ||||| ||| | || ||||||||||| |||||||| |
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| T |
31875106 |
atttacgtctatagacgaagtgagcaaagactatttgaagcctataataatgagattctcaaacaatgtgcagtgtcaactactagttgaagattatata |
31875007 |
T |
|
| Q |
438 |
accctctcggtgagcaccttttcattaagctac |
470 |
Q |
| |
|
| |||| ||||| ||||||| ||||| |||| |
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| T |
31875006 |
ataatctcagtgagtaccttttaattaaactac |
31874974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 31974464 - 31974363
Alignment:
| Q |
36 |
aataattaatcatgtttgacatatataattacat-attctaataattaattagtactatatgctgctggtctttgtttgttaattttgcagcctaaggat |
134 |
Q |
| |
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||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| || | ||||||| ||||||||||||||||| |||| |
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| T |
31974464 |
aataattaatcatgtttgacata----attacattaatctaataattaattagtactatatattgat---ctttgttggttaattttgcagcctagggat |
31974372 |
T |
|
| Q |
135 |
aaactttat |
143 |
Q |
| |
|
||||||||| |
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| T |
31974371 |
aaactttat |
31974363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 31876267 - 31876164
Alignment:
| Q |
35 |
taataattaatcatgtttgacatatataattacatattctaataattaattagtactatatgctgctggtctttgtttgttaattttgcagcctaaggat |
134 |
Q |
| |
|
||||||||||||||||||| ||| |||||| |||||||||||||| |||||||||| ||||| |||||||| ||||||||||||| |||| || |
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| T |
31876267 |
taataattaatcatgtttg----ataaaattac--attctaataattaactagtactata---tgctgatctttgttggttaattttgcaggataagtat |
31876177 |
T |
|
| Q |
135 |
aaactttataaac |
147 |
Q |
| |
|
||||||||||||| |
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| T |
31876176 |
aaactttataaac |
31876164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 440
Target Start/End: Complemental strand, 31881601 - 31881493
Alignment:
| Q |
332 |
caaacgatttaggtctatagacgatgtcagaaaagactatttgaagcctataatattgagcttcctaaacgatgtgaagtttgaattactagttgaacat |
431 |
Q |
| |
|
||||| ||||| |||||||||||| || || |||| |||||||||||||| |||||| ||||| |||| ||||| | ||| || ||| | |||||| | |
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|
| T |
31881601 |
caaaccatttaagtctatagacgaagtgagcaaagggtatttgaagcctatgatattggacttcccaaacaatgtgcactttcaactaccacttgaactt |
31881502 |
T |
|
| Q |
432 |
tatataacc |
440 |
Q |
| |
|
||||||||| |
|
|
| T |
31881501 |
tatataacc |
31881493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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