View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_10 (Length: 529)
Name: NF13849_low_10
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 203 - 521
Target Start/End: Complemental strand, 12755215 - 12754896
Alignment:
| Q |
203 |
gtatgctacgaagcactaacacgacactgacatgtagacactgattaatagactcttacatgtgtcagatatttgacatacaattgatctgaattgtgta |
302 |
Q |
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| T |
12755215 |
gtatgctacgaagcactaacacgacactgacatgtaggcactgattaatagact--tacatgtgtcagatacttgacatacaattgatctgaattgtgta |
12755118 |
T |
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| Q |
303 |
tgctacataggttttgtgttagtattgtgttaatgttgtcgaatgacacatgtccgatac---acacacatttgatttgaattgtctttgctacagaggt |
399 |
Q |
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| T |
12755117 |
tgctacataggttttgtgttagtattgtgttaatgttgttgaatgacacatgtccgataccagacacacatttgatttgaattgtctgtgctacagaggt |
12755018 |
T |
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| Q |
400 |
tgtgttactattgtgttggtgttgatcaccgacacatgttaaacaccaaacacacatttgatctgggttgcctgtgattttgtattagtaattgtatctg |
499 |
Q |
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| T |
12755017 |
tgtgttactattgtgttggtgttgttcaccaacgcatgttagacaccaaacacacttttgatctgggttgcctgtgattttgtattagtaattgtatctg |
12754918 |
T |
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| Q |
500 |
tgttgtgttagtattatctacc |
521 |
Q |
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| T |
12754917 |
tgttgtgttagtgttatctacc |
12754896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 227 - 521
Target Start/End: Complemental strand, 12818152 - 12817857
Alignment:
| Q |
227 |
cactgacatgtagacactgattaatagactcttacatgtgtcagatatttgacatacaattgatctgaattgtgtatgctacataggttttgtgttagta |
326 |
Q |
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| T |
12818152 |
cactgacatgtaggcactgattaatagact--tacatgtgtcagatacttgacatacaattgatctgaattgtgtatgctacataagttttgtgttagta |
12818055 |
T |
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| Q |
327 |
ttgtgttaatgttgtcgaatgacacatgtccgatac---acacacatttgatttgaattgtctttgctacagaggttgtgttactattgtgttggtgttg |
423 |
Q |
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| T |
12818054 |
ttgtgttaatgttgttgaatgacacatgtccgataccagacacacatttgatttgaattgtctgtgctacagaggttgtgttactattgtgttggtgttg |
12817955 |
T |
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| Q |
424 |
atcaccgacacatgttaaacaccaaacacacatttgatctgggttgcctgtgattttgtattagtaattgtatctgtgttgtgttagtattatctacc |
521 |
Q |
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| T |
12817954 |
ttcaccaacgcatgttagacaccaaacacacttttgatctgggttgcctgtgattttgtattagtaattgtatctgtgttgtgttagtgttatctacc |
12817857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 12818351 - 12818228
Alignment:
| Q |
23 |
gcgccgccccaagcttggttacctcctgatgatgagaactggatttatgattttaatgaagaagccttacaggatgaagtttatgattctgattctaaag |
122 |
Q |
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| T |
12818351 |
gcgccgccccaagcttggttacctcctgatgatgagaactggatttatgattttaatgaagaagccttacaggatgaagtttatgattctgattctaaag |
12818252 |
T |
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| Q |
123 |
ttgtgccattgatgattgtaagcg |
146 |
Q |
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| T |
12818251 |
ctgtgccattgatgattgtaagcg |
12818228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 12755392 - 12755280
Alignment:
| Q |
33 |
aagcttggttacctcctgatgatgagaactggatttatgattttaatgaagaagccttacaggatgaagtttatgattctgattctaaagttgtgccatt |
132 |
Q |
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| T |
12755392 |
aagcttggttacctcctgatgatgagaactggatttatgattttaatgaa-aagccttacaggatgaagtttatgattctgattctaaagctgtgccatt |
12755294 |
T |
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| Q |
133 |
gatgattgtaagcg |
146 |
Q |
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| T |
12755293 |
gatgattgtaagcg |
12755280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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