View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_12 (Length: 504)
Name: NF13849_low_12
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 13 - 488
Target Start/End: Original strand, 4283402 - 4283877
Alignment:
| Q |
13 |
attctctataaccgcaattgaaaccacatttcaccgtaattctccacaatacaaagaactacaaagcaactattactacaaccgcaagttaaaacatcga |
112 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4283402 |
attctctataaccgcaattgaaaccacattgcaccgtaattctccgcaatacaaagaacaacaaagcaactattactacaaccgcaagttaaaacatcga |
4283501 |
T |
|
| Q |
113 |
aaatcagataaaatgcagatgccatgagagaacagacaacaaaaataacctgactagataatccaacaacttcctcaacgtcttaagatcagaaacaagc |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4283502 |
aaatcagataaaatgcagatgcaatgagagaacagacaacaaaaataacctgactagataatccaacaacttcctcaacgtcttaagatcagaaacaagc |
4283601 |
T |
|
| Q |
213 |
tgcttagtcttcttccccaaagtatgccaaattggatccaactgtctcctcacaatctcatcaaacgacttaaacaacccattctccactgtcaaatcct |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4283602 |
tgcttagtcttcttccccaaagtatgccaaattggatccaactgtctcctcacaatctcatcaaacgacttaaacaacccattctccacagtcaaatcct |
4283701 |
T |
|
| Q |
313 |
ccacatcaaccttattcgtcttcctcatctctttcaaacacgcatccataacctcgacaatcgctttctgaatccccaacatatacttcgtcatcggaac |
412 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
4283702 |
ccacatcaaccttattcgtcttcctcatctctttcaaacacgcatccataacctcgacaatagctttctgaatccccaccatatacttcgtcatcggaac |
4283801 |
T |
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| Q |
413 |
cctaatatcgaccacatccggtggatccctctcaagctcttgactcacataaacctgaaatctcggccataaatgt |
488 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4283802 |
cctaatatccaccacatccggtggatccctctcaagctcttgactcacataaacctgaaatctcggccataaatgt |
4283877 |
T |
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