View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_14 (Length: 473)
Name: NF13849_low_14
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 44688807 - 44689256
Alignment:
| Q |
1 |
tctctttttctctt-gtctttctattccactatcatttttctttcctacttcaacacttttcactccctagctaccgcatccttaaacttccaaccacca |
99 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44688807 |
tctctttttctctttgtctttctattctactatcatttttctttcctacttcaacacttttcactccctagctaccgcatccttaaacttccaaccacca |
44688906 |
T |
|
| Q |
100 |
tttatttcttagcatcatatacatatactttctttctaaacttcnnnnnnnnnnnntgttactaagaagctatagtgcaccaattccaagttctttcctt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44688907 |
tttatttcttagcatcatatacatatactttctttctaaacttcaaaaagaaaaaatgttactaagaagctatagtgcaccaattccaagttctttcctt |
44689006 |
T |
|
| Q |
200 |
ccacactcaatggaatcttcttctgaacaagaactcaatcaccaccttcctagaacacttgcaagtccaagacatnnnnnnnctgcaccacttcttaaga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44689007 |
ccacactcaatggaatcttcttctgaacaagaactcaatcaccaccttcctagaacacttgcaagtccaagacataaaaaaactgcaccacttcttaaga |
44689106 |
T |
|
| Q |
300 |
atcatcatcaagaagaaatagaacaaaaatttcacaagnnnnnnncaacaccttcaatgagagaactgttttcaagttctagtttagataagcaagtttt |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44689107 |
atcatcatcaagaagaaatagaacaaaaatttcacaagaaaaaaacaacaccttcaatgagagaactgttttcaagttctagtttagataagcaagtttt |
44689206 |
T |
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| Q |
400 |
gtatcatgacgaaggtggtaagaaagttggaaagttgcaaactttagtaa |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44689207 |
gtatcatgacgaaggtggtaagaaagttggaaagttgcaaactttagtaa |
44689256 |
T |
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