View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_15 (Length: 473)
Name: NF13849_low_15
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Original strand, 867051 - 867493
Alignment:
| Q |
13 |
aatatataggttatatatagaaaattgttatcttgatttccaattcattgtgttggggaaattaagattatagtatacatataggaagttgttattttga |
112 |
Q |
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| T |
867051 |
aatatataggttatatatagaaaattgttatcttgatttccaattcattgtgttggggaaattaagattatagtatacatataagaagttgttattttga |
867150 |
T |
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| Q |
113 |
tttctaaattagtttatgtataaagtaatgttgggtgacatattaagattatatttgactttatgatttgcaaatagcatttttatttaaaactatgttg |
212 |
Q |
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| T |
867151 |
tttctaaattagtttatgtttaatgtaatgttgggtgacagattaagattatattagactttatgatttgcaaataacatttttatttaaaattatgtcg |
867250 |
T |
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| Q |
213 |
tttcacaaacatttatcatatgcgttgtacttac-ggataaacaattttactactatgatcaaaagcaaacatgcatcaaactgtaattaatagttttgc |
311 |
Q |
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| T |
867251 |
tttcacaaacatttatcatatgcgttgtacttacaggatacacaattttaccactatgatcaaaagcaaacatgcatcaaactgtaattaatagttttgg |
867350 |
T |
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| Q |
312 |
tatcaannnnnnnnnnnnnnnnnnncgcaaattttgttagaagaaaacaagctagtataattccctaaaaagaaaagacagctaacaaaatttcattagt |
411 |
Q |
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| T |
867351 |
tatcaattttttatttttattttttcgcaaattttgttagaagaaaacaagctagtataattccctaaaaagaaaagacaactaacaaaatttcattagt |
867450 |
T |
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| Q |
412 |
aagaattagtcaggatcatgaattgaaagtgacacaccatgtg |
454 |
Q |
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| T |
867451 |
aagaattagtcaggatcatgaattgaaagtgacacaccatgtg |
867493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 454
Target Start/End: Complemental strand, 860835 - 860804
Alignment:
| Q |
423 |
aggatcatgaattgaaagtgacacaccatgtg |
454 |
Q |
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| T |
860835 |
aggatcatgaattgaaagtgacacaccatgtg |
860804 |
T |
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