View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_17 (Length: 450)
Name: NF13849_low_17
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 39549033 - 39549469
Alignment:
| Q |
1 |
ggaaatcacaaaaagacgcgcgtcagactttcaaaacaaatgaggatattctcggtaaaattttagttgactttggcagaaaaacaggtcaacggcaaat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
39549033 |
ggaaatcacaaaaacacgcgcgtcagactttcaaaacaaatgaggaaattctcagtaaaattttagttgactttggcagaaaaacaggtcaacagcgaat |
39549132 |
T |
|
| Q |
101 |
gaaattgttttgctttgctttg-----tgatgataccttttaatacatctagcaatttttctaaaataaattatttagatgagaaagaatgataagttaa |
195 |
Q |
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|||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39549133 |
gaaattgttttgctttgctttgctttgtgatgataccttttactatatctagcaatttttttaaaataaattatttagatgagaaagaatgataagttaa |
39549232 |
T |
|
| Q |
196 |
aatagagataaaagaccaagtcatcaaaatttaaaagctggcaatcttgattaaaaaatagcatcatatgtccgctgtaataagccttggcttatgtcac |
295 |
Q |
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|||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39549233 |
aatagagataaa-gaccaggtcatcaaaattcaaaagctggcaatcttgattaaagaatagcatcatatgtccgctgtaataagccttggcttatgtcac |
39549331 |
T |
|
| Q |
296 |
tgtaagcaaccttacagagacagggtcgttggatgatgaagttcaattgaatgaaccctgcactttctaaaccataatttttgcgccccactccccagca |
395 |
Q |
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| T |
39549332 |
tataagcaaccttacagagacagggtcgttggatgatgaagttcaattgcatgaaccctgcactttctaaaccataatttttgcgccctactctccagca |
39549431 |
T |
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| Q |
396 |
tctctgcaccaatttccccttaccatcaaactcgtgca |
433 |
Q |
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| T |
39549432 |
tctctgcaccaatttccccttaccatcaaactcgtgca |
39549469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 6139375 - 6139327
Alignment:
| Q |
157 |
taaaataaattatttagatgagaaagaatgataagttaaaatagagata |
205 |
Q |
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| T |
6139375 |
taaaataaattatttagatgagagagaatgaatggttaaaagagagata |
6139327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 27825052 - 27825100
Alignment:
| Q |
157 |
taaaataaattatttagatgagaaagaatgataagttaaaatagagata |
205 |
Q |
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||||||||||||||| ||||||||| ||| || |||||||| ||||||| |
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| T |
27825052 |
taaaataaattattttgatgagaaataattattagttaaaacagagata |
27825100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 39994248 - 39994200
Alignment:
| Q |
157 |
taaaataaattatttagatgagaaagaatgataagttaaaatagagata |
205 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||| ||||||| |
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| T |
39994248 |
taaaataaattatttagatgagagagaatgagttgttaaaagagagata |
39994200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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