View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_18 (Length: 435)
Name: NF13849_low_18
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 26413753 - 26413346
Alignment:
| Q |
17 |
actaactacaaatatgtttggaaacgcggtgcaaatatctggacgaatggtccgagagaagctagtagttgtagccttgagattgatgtctggcggcagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26413753 |
actaactacaaatatgtttggaaacgcggtgcaaatatctggacaaatggtccgagagaagctagtagttgtagccttgagattgatgtctggtggcagc |
26413654 |
T |
|
| Q |
117 |
atgaatctgacgctctcgaaacacacactagattgcatgtactgtgttgcacataccagggttcctaacacaccaaagtggctgaataggctcagctcct |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26413653 |
atgaatctgacgctctcgaaacacac--tagattgcatgtactgtgttgcacataccagggttcctaacacaccaaagtggctgaataggctcagctcct |
26413556 |
T |
|
| Q |
217 |
atacctctactcaccattctgcttcgccattcattcaatctatctgttgcctctgcgtatcgcttcagacccttttcatccctattgcccgaccacaacg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
26413555 |
atacctctactcaccattctgcttcgccattcattcaatctatctgttgcctctgcgtatcgcttcagacccttctcatccctattgcctgaccacaacg |
26413456 |
T |
|
| Q |
317 |
actcagccattgcagaagttctaggccaaagccgcgaatccaaaacagtttcatcggcttgttctgaccacaacgctacctccccacctaaaaccaattt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26413455 |
actcagccattgcagaagttctaggccaaagccgcgaatccaaaacagtttcatcggcttgttctgaccacaacgctacctccccacctaaaaccaattt |
26413356 |
T |
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| Q |
417 |
cgcttcttct |
426 |
Q |
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|||||||||| |
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| T |
26413355 |
cgcttcttct |
26413346 |
T |
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