View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_2 (Length: 692)
Name: NF13849_low_2
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 263 - 675
Target Start/End: Original strand, 51821586 - 51821998
Alignment:
| Q |
263 |
ttactatagttctattgtctcaatctatataattgatggtgaaaataatgatgcagctactgttgtggaatatttttctgattctaaaaaacaaacaaat |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51821586 |
ttactatagttctattgtctcaatctatataattgatggtgaaaataatgatgcagctactgttgtggaatatttttctgattctaaaaaacaagcaaat |
51821685 |
T |
|
| Q |
363 |
gaagatgattcatcagaggatcccatttacaagtgctatgaggccgttttagattctaaagctaaggatgaaacattggtaagtctgtgcccttttttgt |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
51821686 |
gaagatgattcatcagaggatcccatttacaagtgctatgaggccgttttagattctaaagctagggatgaaacactggtaagtctgtgcccttttttgt |
51821785 |
T |
|
| Q |
463 |
caagtaaagtatactaggaatttcccttcattttttatnnnnnnngtatatcagaaatttgtttttgtaacagaagatcttacagtgttgaattaaacag |
562 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51821786 |
caagtaaagtatactaggaatttccctttattttttataaaaaaagtatatcaggaatttgtttttgtaacagaagatcttacagtgttgaattaaacag |
51821885 |
T |
|
| Q |
563 |
gcattgcaagcaagttgggagccaagatactcaagatgctgccagagaatcccatggcagcaatatgcaaaagtaggagcttctcttcgccattttagtt |
662 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51821886 |
gcattgcaagcaagttgggagccaagatactcaaaatgctgccagagaatcccatggcagcaatatgcaaaagtaggagcttctcttcgccattttagtt |
51821985 |
T |
|
| Q |
663 |
acactgttgtagc |
675 |
Q |
| |
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||||||||||||| |
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| T |
51821986 |
acactgttgtagc |
51821998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 51821337 - 51821532
Alignment:
| Q |
14 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaag |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51821337 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcaaaacttgaag |
51821436 |
T |
|
| Q |
114 |
gcttagccaactctgtagaaggtaaaaagccaagtcaccacttcattaaagaatattgcttatgtttgtgaaacaagaactgctgaagagtatttg |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51821437 |
gcttagccaactctgtagaaggtaaaaagccaggtcaccacttcattaaagaatattgcttatgtttgtgaaacaagaactgctgaagagtatttg |
51821532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 285 - 675
Target Start/End: Original strand, 51851368 - 51851757
Alignment:
| Q |
285 |
atctatataattgatggtgaaaataatgatgcagctactgttgtggaatatttttctgattctaaaaaacaaacaaatgaagatgattcatcagaggatc |
384 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||| | |||| |||||||||||| ||||||| |||||||| ||||||| ||||||||| ||||||| |
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| T |
51851368 |
atctttataattgaatatgaaaacaatgatgcagtttctgtcatggaatatttttatgattctgaaaaacaagcaaatga---tgattcatctgaggatc |
51851464 |
T |
|
| Q |
385 |
ccatttacaagtgctatgaggccgttttagattctaaagctaaggatgaaacattggtaagtctgtg-cccttttttgtcaagtaaagtatactaggaat |
483 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||||| || ||| |
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| T |
51851465 |
tcatttacaagtgctacgaggccgttttagactctaaatctaaggatgaaacactggtaagctagtgtcccttttttgtcaagtaaagtatataagaaat |
51851564 |
T |
|
| Q |
484 |
ttcccttca--ttttttatnnnnnnn-gtatatcagaaatttgtt-tttgtaacagaagatcttacagtgttgaattaaacaggcattgcaagcaagttg |
579 |
Q |
| |
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| |||||| |||||||| |||||||||||||| || ||||| | ||||||||| ||| | ||| ||||||||| | ||||||| ||| |
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| T |
51851565 |
tccccttctatttttttataaaagaaagtatatcagaaattggtactttgtgatagaagatct---agtttcgaaataaacaggctatacaagcaaattg |
51851661 |
T |
|
| Q |
580 |
ggagccaagatactcaagatgctgccagagaatcccatggcagcaatatgcaaaagtaggagcttctcttcgccattttagttacactgttgtagc |
675 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
51851662 |
ggagccaagatactcaagatgctgccacaggatcccatggcagcaatatgcaaaagtaggagctgctcttcgccattttagttacaccgttgtagc |
51851757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 271 - 437
Target Start/End: Original strand, 51861487 - 51861653
Alignment:
| Q |
271 |
gttctattgtctcaatctatataattgatggtgaaaataatgatgcagctactgttgtggaatatttttctgattctaaaaaacaaacaaatgaagatga |
370 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||||| ||||||||||||| |
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| T |
51861487 |
gttctattgtatcaatctatataactgatggtgaaaataatgatgcagttactgttgtggactatttttatgattctgaaaaacaagcaaatgaagatga |
51861586 |
T |
|
| Q |
371 |
ttcatcagaggatcccatttacaagtgctatgaggccgttttagattctaaagctaaggatgaaaca |
437 |
Q |
| |
|
|||||| |||||||| |||||||||||||| || || |||||||| ||||||||||||||||||||| |
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|
| T |
51861587 |
ttcatccgaggatcctatttacaagtgctacgaagctgttttagactctaaagctaaggatgaaaca |
51861653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 51861296 - 51861422
Alignment:
| Q |
14 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaag |
113 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| || ||||||| |
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| T |
51861296 |
atatgcatcggcgttgctatttgtcttgtgatgaccctatttgtatttccaaactggtcaggtgaagaccttcataaatccaccatatcaaagcttgaag |
51861395 |
T |
|
| Q |
114 |
gcttagccaactctgtagaaggtaaaa |
140 |
Q |
| |
|
|||||||||||||| |||||||||||| |
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| T |
51861396 |
gcttagccaactctatagaaggtaaaa |
51861422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 552 - 672
Target Start/End: Original strand, 51861734 - 51861854
Alignment:
| Q |
552 |
gaattaaacaggcattgcaagcaagttgggagccaagatactcaagatgctgccagagaatcccatggcagcaatatgcaaaagtaggagcttctcttcg |
651 |
Q |
| |
|
||||| |||||||| ||||||| | |||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||| ||| |||||||||| |
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|
| T |
51861734 |
gaattgaacaggcaatgcaagctaattgggagccaagatactcaagaagctgccataggatcccatggcaacaatatgcaaaagtcggaacttctcttcg |
51861833 |
T |
|
| Q |
652 |
ccattttagttacactgttgt |
672 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
51861834 |
tcattttagttacactgttgt |
51861854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 51851144 - 51851268
Alignment:
| Q |
14 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaag |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| || ||||||||||||||||| || ||||||| |
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|
| T |
51851144 |
atatgcataggcgttggtctttgtcttgtgatgagcctatttgtatttccaaactggtcaggggaagaactccataaatccaccatatcaaagcttgaag |
51851243 |
T |
|
| Q |
114 |
gcttagccaactctgtagaaggtaa |
138 |
Q |
| |
|
| |||||||| || |||||||||| |
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|
| T |
51851244 |
gattagccaaatccatagaaggtaa |
51851268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 51376023 - 51375983
Alignment:
| Q |
360 |
aatgaagatgattcatcagaggatcccatttacaagtgcta |
400 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
51376023 |
aatgaagatgattcatctgaggatcccgtttacaagtgcta |
51375983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 40634312 - 40634416
Alignment:
| Q |
33 |
tttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaaggcttagccaactctgtaga |
132 |
Q |
| |
|
|||||||| | |||||||| || |||||||| |||||||||||||||||||||||| | ||||| | |||||||||||| | ||||| ||| |||| |
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| T |
40634312 |
tttgtcttttcatgagtcttttagtatttccaaattggtcaggggaagaccttcatcattccacagctttcaaacttgaaggccttgccaaatctataga |
40634411 |
T |
|
| Q |
133 |
aggta |
137 |
Q |
| |
|
||||| |
|
|
| T |
40634412 |
aggta |
40634416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 42454276 - 42454230
Alignment:
| Q |
87 |
ataaatccaccatatcgaaacttgaaggcttagccaactctgtagaa |
133 |
Q |
| |
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|||||||||||||||| || |||||||||||||||| |||| ||||| |
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| T |
42454276 |
ataaatccaccatatcaaagcttgaaggcttagccatctctatagaa |
42454230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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