View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_20 (Length: 430)
Name: NF13849_low_20
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 49159243 - 49159494
Alignment:
| Q |
11 |
atcatcacattatatagttgggtaggaaggaaacagtgctttgtaagtggttatgtggtcctcaagttcatgaaagcctaatttgaaggcagttgaaggg |
110 |
Q |
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| T |
49159243 |
atcatcacattatatagttgggtaggaaggaaacagtgctttgtaagtggttatgtggtcctcaagttcatgaaagcctaatttgaaggcagttgaaggg |
49159342 |
T |
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| Q |
111 |
tggcaaaggaacatgatatggtgggaagagggggaccttcgttaatcaatcaaacaataacacacccaaatggcacgcacaatactactaattatttttc |
210 |
Q |
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| T |
49159343 |
tggcaaaggaacatgatatggtgggaagagggggaccttcgttaatcaatcaaacaataacacacccaaatggcacgcacaatactactaattatttttc |
49159442 |
T |
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| Q |
211 |
aaacggtaccttaaaccaccttcaatggtgaacactatccattgttattttg |
262 |
Q |
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| T |
49159443 |
aaacggtaccttaaaccaccttcaacggtgaacactatccattgttattttg |
49159494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 269 - 413
Target Start/End: Original strand, 49159548 - 49159692
Alignment:
| Q |
269 |
atattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatctataaaatactcatattgagtcccacaaatttacctcacatcaa |
368 |
Q |
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| T |
49159548 |
atattgtgtcaaatcatcttgaaacaactcttctattttttattccaatgatgatctataaaatactcatattgagtcccacaaatttacctcacatcaa |
49159647 |
T |
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| Q |
369 |
tactttattccttttattgttattttaatcaaaataaccgatgct |
413 |
Q |
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| T |
49159648 |
tactttattccttttattgttattttaatcaaaataaccgatgct |
49159692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 227 - 402
Target Start/End: Original strand, 5335022 - 5335202
Alignment:
| Q |
227 |
caccttcaatggtgaacactatccattgttattttgaaggtcatattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatcta |
326 |
Q |
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||||| ||||||||||| | || ||||||||||||| ||| |||||||||||| ||||| || ||||| ||||||||| ||||||||| ||||||| |
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| T |
5335022 |
cacctccaatggtgaactccattcattgttattttgtgggttccattgtgccaaatcatcttaaagtaactcctctatttttcactccaatggtgatcta |
5335121 |
T |
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| Q |
327 |
taaaatactcatattgagtcccacaaatttacctc--acatcaatactttattcctt---ttattgttattttaatcaaaa |
402 |
Q |
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| T |
5335122 |
taaaatactcatgttaggtcccacaaatttacttcaaacattaatgctttattccttctgttgttgttattttaatcaaaa |
5335202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 45737111 - 45737207
Alignment:
| Q |
319 |
atgatctataaaatactcatattgagtcccacaaatttacct--cacatcaatactttattccttttattgttattttaatcaaaataaccgatgct |
413 |
Q |
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| T |
45737111 |
atgatctataaaataattatattgagtcccataaatttacctcacacattaatactttagtccttctattgtttttttaattagaataaccgttgct |
45737207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 252 - 407
Target Start/End: Original strand, 7664425 - 7664582
Alignment:
| Q |
252 |
ttgttattttgaaggtcatattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatctataaaatactcatat-tgagtcccac |
350 |
Q |
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||||||||||| |||| |||||| |||||| |||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||| | ||| | | || |
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| T |
7664425 |
ttgttattttgtgggtcttattgtaccaaataatcttgaagcaactcctctattttttacttcaatggtgatctataaaatactcatgtctga-tgctac |
7664523 |
T |
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| Q |
351 |
aaatttacctc--acatcaatactttattccttttattgttattttaatcaaaataacc |
407 |
Q |
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| T |
7664524 |
aaatttacctcatacatgaattctttattccttttattgttattttaatcgaaataacc |
7664582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 17434370 - 17434298
Alignment:
| Q |
269 |
atattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatctataaaatactcatatt |
341 |
Q |
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||||| |||||||| ||||||||| ||||| | ||||||||||||||||||| || ||||| ||||||||| |
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| T |
17434370 |
atattatgccaaatcatcttgaaataactcatgcgttttttactccaatgatgaactctaaaaaactcatatt |
17434298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 383
Target Start/End: Original strand, 34374601 - 34374756
Alignment:
| Q |
230 |
cttcaatggtgaacactatccattgttattttgaaggtcatattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatctataa |
329 |
Q |
| |
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|||||||||||||| ||| ||| |||||||||| ||||||||||| |||||| |||||||| || ||| | |||| |||||||||||| |||||| ||| |
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| T |
34374601 |
cttcaatggtgaactctacccactgttattttgtgggtcatattgtaccaaatcatcttgaagcatctcctatattatttactccaatggtgatctttaa |
34374700 |
T |
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| Q |
330 |
aatactcatattgagtcccacaaatttacct--cacatcaatactttattcctttt |
383 |
Q |
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| |||||||||| || |||||||||||||| ||||| |||||||| |||||||| |
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| T |
34374701 |
attactcatatttggttccacaaatttacctcacacattaatactttgttcctttt |
34374756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 227 - 365
Target Start/End: Complemental strand, 3311357 - 3311219
Alignment:
| Q |
227 |
caccttcaatggtgaacactatccattgttattttgaaggtcatattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatcta |
326 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||| || | |||| ||||| || |||||| ||| |||| || |||||||||| ||||| | | || |
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| T |
3311357 |
caccttcaatggtgaactctatccatgattattttgagggccctattatgccacataatcttgtaactactcatcaattttttacttcaatggtaaactt |
3311258 |
T |
|
| Q |
327 |
taaaatactcatattgagtcccacaaatttacctcacat |
365 |
Q |
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|||||||||||| ||| ||||||||| |||||| ||||| |
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| T |
3311257 |
taaaatactcatcttgggtcccacaattttaccacacat |
3311219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 26454077 - 26454009
Alignment:
| Q |
290 |
aaacaactcttctattttttactccaatgatgatctataaaatactcatattgagtcccacaaatttac |
358 |
Q |
| |
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||||||||| | ||||||||||||||||| ||| || |||| ||||||||| ||||||||| ||||| |
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|
| T |
26454077 |
aaacaactcatttattttttactccaatggtgaactctaaacaactcatattaggtcccacaactttac |
26454009 |
T |
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