View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_21 (Length: 404)
Name: NF13849_low_21
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 41179893 - 41180078
Alignment:
| Q |
39 |
agaacctgtgtaaaggtgaatcatttatcaaagtgatata-ctatattatattaattaatttgccttaatatttaaatctatgtatgtacaagtgtcgat |
137 |
Q |
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| T |
41179893 |
agaacatgtgtaaaggtgaatcatttatcaaagtgatctaactatattatattaattaatttgc--taatatttaaatctatgtatgtacaagtgtcgat |
41179990 |
T |
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| Q |
138 |
taccgatagtgacacaacgtgccttggattttggt---aggagtaa---aaacgtccacaatatttgactcaacatcatcattcggtc |
219 |
Q |
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| T |
41179991 |
taccgatggtgacacaacgtgccttggattttggtaggaggagtaagagatacgtccgcgatatttgactcaacatcatcattcggtc |
41180078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 41180131 - 41180192
Alignment:
| Q |
272 |
gccggtagttgtatattagctagattttgtttgtttgttttcgaccacaacacaaacatata |
333 |
Q |
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| T |
41180131 |
gccggtagttgtatattagctagattttgtttgtttgttttggaccacaacacaaacatata |
41180192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 41180324 - 41180379
Alignment:
| Q |
332 |
tataatgtacataaatgcagtaaatatgtctcttctgctctttgttcactataatg |
387 |
Q |
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| T |
41180324 |
tataatgtacataaatacagtaaatatgtttcttctactctttgtcaactataatg |
41180379 |
T |
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