View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_26 (Length: 351)
Name: NF13849_low_26
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 1407672 - 1407344
Alignment:
| Q |
20 |
acaacaacactagtattaatttgagaaaatgaagttatttgaacgtaccaatcacatgtgtcgatgttcaacatgttgatccatgtaattattcgtaaca |
119 |
Q |
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| T |
1407672 |
acaataacactagtattaatttgagaaaatgaagttatttgaatgtaccaatcacatgtgtcgatgttcaacatgttgatccatgtaattattcgtaacg |
1407573 |
T |
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| Q |
120 |
aaacagaccttgtagtctatgttgtagtacaaagtggatgtatctacgcagagagaaatgaagtagag-------tcatcgtataacatgaat----aca |
208 |
Q |
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| T |
1407572 |
aaacggaccttgtagtctatgttgtagtacaaagtggatgtatctacgcagagagaaatgaagtagagactgttttcatcatataacatgaatacaaaca |
1407473 |
T |
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| Q |
209 |
aacattgactgatatctgctttagtcaatttgggtaagcttaaggtttcaaactattgaattgtaagagaatcaagctattcctcagaatgaatgcatat |
308 |
Q |
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| T |
1407472 |
aacattgaccgatatctgctttagtcaatttgggtaagcttaaggtttcgaactattgaatggtaagagaatcaagctattccttagaatgaatgtatat |
1407373 |
T |
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| Q |
309 |
atcagacaatcgtagatcctcgagaatta |
337 |
Q |
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| T |
1407372 |
atcagacaatcgtagatcctcgagaatta |
1407344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 64 - 337
Target Start/End: Complemental strand, 1396616 - 1396336
Alignment:
| Q |
64 |
gtaccaatcacatgtgtcgatgttcaacatgttgatccatgtaattattcgtaacaaaacagaccttgtagtctatgttgtagtacaaagtggatgtatc |
163 |
Q |
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| T |
1396616 |
gtaccaatcacatgtgtcgatgttcaacatgttgatc-atgtaattgttcgtaacgaaacagaccttgtagtctatgttatagtacaaagtggatgtatc |
1396518 |
T |
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| Q |
164 |
tacgcagagagaaatgaagtagag-------tcatcgtataacatgaatacaaacattgactgatatctgctttagtcaatttgggtaagct-taaggtt |
255 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1396517 |
tacgcagagagaaatgaagtagagactgttttcatcatataacatgaatacaaacattgactgatatctgctttagtcaatttgggtaagctataaggtt |
1396418 |
T |
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| Q |
256 |
tcaaactattgaattgtaagagaatcaagctattcctcagaatgaatgcatatatcagacaatcgtagatcctcgagaatta |
337 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1396417 |
tcaaactattgaattttaagagaatcaagctattcctcagaatgaatgtatatatcagacaatcgtagatcctcgagaatta |
1396336 |
T |
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