View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_28 (Length: 342)
Name: NF13849_low_28
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 105 - 324
Target Start/End: Original strand, 40359870 - 40360089
Alignment:
| Q |
105 |
gattcataaggaattgaatcgattaaacaagccaaaaatggctaaaaagtaatagnnnnnnnnnn--gagggagaaaaatgaaattattacaagctgctt |
202 |
Q |
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| T |
40359870 |
gattcataaggaattgaatcgattaaacaagccaaaaatggctaaaaagtaatagaaaaaaaaaaaagagggagaaaaatgaaattattacaagctgctt |
40359969 |
T |
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| Q |
203 |
cattcttctaatacctagtacgtagcaagtaataatatcatatagtatatgatcaatttgctgcttttgcagcaacaagacggcttctgtgttcacctgt |
302 |
Q |
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| T |
40359970 |
cattcttctaatacctagtacgtagcaagtaataatatcatatag--tatgatcaatttgctgcttttgcagcaacaagacggcttctgtgttcacctgt |
40360067 |
T |
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| Q |
303 |
acaggaagatattgggtggtag |
324 |
Q |
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|||||||||||||||||||||| |
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| T |
40360068 |
acaggaagatattgggtggtag |
40360089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 40359798 - 40359876
Alignment:
| Q |
11 |
cagagaaaaatgt-gtactaggcatttcacataatgaacaaagacaaccatgtgttgtggtctaattcttctgattcat |
88 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40359798 |
cagagaaaaatgtagtactaggcatttcacataatgaacaaagacaaccatgtgttgtggtctgattcttctgattcat |
40359876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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