View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13849_low_33 (Length: 234)

Name: NF13849_low_33
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13849_low_33
NF13849_low_33
[»] chr6 (5 HSPs)
chr6 (1-216)||(33465947-33466162)
chr6 (1-216)||(34605597-34605812)
chr6 (1-216)||(34726874-34727089)
chr6 (1-189)||(34729247-34729436)
chr6 (1-216)||(3047991-3048203)
[»] chr3 (5 HSPs)
chr3 (1-211)||(30858866-30859073)
chr3 (2-216)||(39193333-39193541)
chr3 (1-92)||(38866824-38866915)
chr3 (106-158)||(530012-530064)
chr3 (5-81)||(563146-563222)
[»] chr5 (1 HSPs)
chr5 (1-167)||(1204604-1204764)
[»] chr4 (2 HSPs)
chr4 (1-74)||(55837874-55837947)
chr4 (1-73)||(55773663-55773735)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 33466162 - 33465947
Alignment:
Q  1 tgttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaagaatactcctgctgtaacttctaccaaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  33466162 tgttgtcactgacaaggccaacatagggatgctcagcttgaaatatgcaaatataaattttttagaactgaagaatactcctgttgtaacttctaccaaa 33466063  T
Q  101 tcttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatattatgtcaaaggtaacatataacgtgtacaagatagatttctcta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33466062 tcttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatattatgtcaaaggtaacatataacgtgtacaagatagacttctcta 33465963  T
Q  201 ctatggattatgtcaa 216  Q
    ||||||||||||||||    
T  33465962 ctatggattatgtcaa 33465947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 34605597 - 34605812
Alignment:
Q  1 tgttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaagaatactcctgctgtaacttctaccaaa 100  Q
    ||||||||| |||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||         
T  34605597 tgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgtaacttctagtcgt 34605696  T
Q  101 tcttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatattatgtcaaaggtaacatataacgtgtacaagatagatttctcta 200  Q
    | ||| ||||||||| |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||    
T  34605697 tattggtcacacgtagggttggttagttgtgatggatatcttttagtgcttaattttatgtcaaaggtaacgtataacgtgtacaagatagacttctcta 34605796  T
Q  201 ctatggattatgtcaa 216  Q
    | ||||||||||||||    
T  34605797 ccatggattatgtcaa 34605812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 34726874 - 34727089
Alignment:
Q  1 tgttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaagaatactcctgctgtaacttctaccaaa 100  Q
    ||||||||| |||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||         
T  34726874 tgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgtaacttctagtcgt 34726973  T
Q  101 tcttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatattatgtcaaaggtaacatataacgtgtacaagatagatttctcta 200  Q
    | ||| ||||||||| |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||    
T  34726974 tattggtcacacgtagggttggttagttgtgatggatatcttttagtgcttaattttatgtcaaaggtaacgtataacgtgtacaagatagacttctcta 34727073  T
Q  201 ctatggattatgtcaa 216  Q
    | ||||||||||||||    
T  34727074 ccatggattatgtcaa 34727089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 34729247 - 34729436
Alignment:
Q  1 tgttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaatttttt-agaattgaagaatactcctgctgtaacttctaccaa 99  Q
    ||||||||| ||||||||||||||| |||| ||||  |||||||||| ||||||||||||||| |||| | |||| |||||||| |||||||||||| |     
T  34729247 tgttgtcactgacaaggccaacataaggatactcaatttgaaatatgcaaatataaatttttttagaactaaagagtactcctggtgtaacttctactat 34729346  T
Q  100 atcttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatattatgtcaaaggtaacatataacgtgtacaagat 189  Q
     ||| | ||||||||||||||| |||| |||| ||||||||||| |||| ||||| |||||||||||||||| | |||||||||||||||    
T  34729347 ttctcggtcacacgtaaggttgattagttgtgttggatatctttgagtgcttaatgttatgtcaaaggtaacttttaacgtgtacaagat 34729436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 3047991 - 3048203
Alignment:
Q  1 tgttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaagaatactcctgctgtaacttctaccaaa 100  Q
    |||||||||| |||| ||||||||||||||  ||| |||||| | |  |||||||||||||||||||||||||| ||||  |   |||  || |          
T  3047991 tgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaattttttagaattgaagactactattcaagtacattttgtt--- 3048087  T
Q  101 tcttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatattatgtcaaaggtaacatataacgtgtacaagatagatttctcta 200  Q
    |||| | |||||||  |||||||||| ||||||||| ||||||||||| || |||||||||| |||||||||| ||| |||||||||||||||||||| |    
T  3048088 tcttacgcacacgtcgggttggttagttgtgatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaa 3048187  T
Q  201 ctatggattatgtcaa 216  Q
    | ||||||||||||||    
T  3048188 ccatggattatgtcaa 3048203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 30859073 - 30858866
Alignment:
Q  1 tgttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaagaatactcctgctgtaacttctaccaaa 100  Q
    ||||||||| |||||||| ||||||||||| || |||||||| | || |||||||||| ||||| || |||||| |||||||| ||||| ||||||        
T  30859073 tgttgtcactgacaaggctaacatagggatacttagcttgaactctgcaaatataaatgttttacaactgaagagtactcctgatgtaatttctac---t 30858977  T
Q  101 tcttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatattatgtcaaaggtaacatataacgtgtacaagatagatttctcta 200  Q
    |||| |||||| |||||||||||||| ||||||||| ||||| ||||| ||||| |||| || |||| ||||| ||  |||||||||||||| || || |    
T  30858976 tcttactcacatgtaaggttggttagttgtgatggacatcttctagtgcttaattttatatccaaggaaacatttagtgtgtacaagatagacttatcaa 30858877  T
Q  201 ctatggattat 211  Q
    | |||||||||    
T  30858876 ccatggattat 30858866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 39193541 - 39193333
Alignment:
Q  2 gttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaagaatactcctgctgtaacttctaccaaat 101  Q
    ||||||||  |||| |||||||||||||| |||| |||||| | ||  ||||||| |||||||||||| |||| ||||| |  ||||||| || | |       
T  39193541 gttgtcactaacaaagccaacatagggatactcaacttgaattctgcgaatataatttttttagaattcaagagtactcgtagtgtaactcctgcta--- 39193445  T
Q  102 cttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatattatgtcaaaggtaacatataacgtgtacaagatagatttctctac 201  Q
      || |||||||||||| ||||||| ||||||| ||||||||||||| | ||||||| ||| || | || || ||| |||||||||||||||||||| ||    
T  39193444 --tg-tcacacgtaaggctggttagatgtgatgaatatcttttagtgctgaatattaggtccaatgcaatatttaatgtgtacaagatagatttctcaac 39193348  T
Q  202 tatggattatgtcaa 216  Q
     ||| ||||||||||    
T  39193347 catgaattatgtcaa 39193333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 38866915 - 38866824
Alignment:
Q  1 tgttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaagaatactcctgctgtaactt 92  Q
    |||| |||| |||||||||||||| ||||| ||||| ||||| | || ||||||||| ||||||||  |||||| |||||||  ||||||||    
T  38866915 tgttatcactgacaaggccaacattgggatactcagtttgaattctgcaaatataaactttttagatctgaagagtactcctagtgtaactt 38866824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 530064 - 530012
Alignment:
Q  106 ctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatatta 158  Q
    ||||||| ||||||||||||| ||||||||| | ||||||||| || ||||||    
T  530064 ctcacacctaaggttggttagttgtgatggacaacttttagtgattcatatta 530012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 563222 - 563146
Alignment:
Q  5 gtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaagaatactcc 81  Q
    ||||||||||||  |||||||||  | |||  |||||| |||| ||||||||||||||||||| | || ||||||||    
T  563222 gtcaccgacaagatcaacataggtgtactcgacttgaattatgcaaatataaattttttagaacttaacaatactcc 563146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 1204764 - 1204604
Alignment:
Q  1 tgttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaagaatactcctgctgtaacttctaccaaa 100  Q
    ||||||||  ||| ||||||||||||||||  |||||||||  | || |||||||| |||||| |||||||    |||||||| | |||||| |||        
T  1204764 tgttgtcattgacgaggccaacatagggattgtcagcttgagttctgcaaatataagttttttggaattgag---tactcctggtataacttttactc-- 1204670  T
Q  101 tcttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatattatgtcaaagg 167  Q
     ||| ||||||||||||| ||||||| ||||||||| ||||||||||| ||||| ||||||| ||||    
T  1204669 -cttactcacacgtaaggctggttagttgtgatggacatcttttagtgcttaattttatgtccaagg 1204604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 55837874 - 55837947
Alignment:
Q  1 tgttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaaga 74  Q
    |||||||| ||||||||||||||||||||| |||| ||| || | || ||||||||| ||||||||| ||||||    
T  55837874 tgttgtcaacgacaaggccaacatagggatactcaacttaaattctgcaaatataaagtttttagaaatgaaga 55837947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 55773663 - 55773735
Alignment:
Q  1 tgttgtcaccgacaaggccaacatagggatgctcagcttgaaatatggaaatataaattttttagaattgaag 73  Q
    |||||||| ||||||||||||||||||||| |||| ||| || | || |||||| || ||||||||| |||||    
T  55773663 tgttgtcaacgacaaggccaacatagggatactcaacttaaattctgcaaatattaagtttttagaaatgaag 55773735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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