View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_4 (Length: 581)
Name: NF13849_low_4
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 7424803 - 7424454
Alignment:
| Q |
20 |
tagtcacatgcaacaagacacaacattcacatgatctcctggtttcttacatcgagtattaatagggagcaggattgttggtctttatctttacttctct |
119 |
Q |
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| T |
7424803 |
tagtcacatgcaacaagacacaacattcacatgatctcctggtttcttacatcgagtattaatagggagcaggattgttggtctttatctttacttctct |
7424704 |
T |
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| Q |
120 |
attattatgagcaaagaaacatttttcagaaccaattaacannnnnnnnnnnnnnaacttattgtagtaaaatctcatattcaaggagggttgtcttcgc |
219 |
Q |
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| T |
7424703 |
attattatgagcaaagaaacatttttcagaaccaattaaca--ttttttttttttaacttattgtagtaaaatctcatattcaaggagggttgtcttcgc |
7424606 |
T |
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| Q |
220 |
tagtagtccacgc--tatagcattttcatttttggaatcagactatgttggcatagttgcttgaacgacaaaaatcactcatttgacaaacaccaacaac |
317 |
Q |
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| T |
7424605 |
tagtagtccacgctatatagcattttcatttttggaatcagactatgttggcatagttgcttgaacgacaaaaatcactcatttgacaaacaccaacaac |
7424506 |
T |
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| Q |
318 |
gannnnnnnngcagttaacaacttaacctaatgatttagtaaaatttaaatg |
369 |
Q |
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| T |
7424505 |
tattttttttgcagttaacaacttaacctaatgatttagtaaaatttaaatg |
7424454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 404 - 488
Target Start/End: Complemental strand, 7424024 - 7423940
Alignment:
| Q |
404 |
gatggatgaatgaatgttatggcaacggagaaggccatgatgtctcttcctctttctcaaaccttccctgttttcgttctccatg |
488 |
Q |
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| T |
7424024 |
gatggatgaatgaatgttatggcaacggagaaggccatgatgtctcttcctctttctcaaaccttccctgttttcgttctccatg |
7423940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 516 - 565
Target Start/End: Complemental strand, 7423913 - 7423864
Alignment:
| Q |
516 |
agctgagtcgtagcattttgccacataggcgtgtgtcaaagggtggaaag |
565 |
Q |
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| T |
7423913 |
agctgagtcatagcattttgccacataggcgtgtgtcaaagggtggaaag |
7423864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 405
Target Start/End: Complemental strand, 7424101 - 7424066
Alignment:
| Q |
370 |
attttgaaagtcacctttgaaacaaaccacaaagga |
405 |
Q |
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| T |
7424101 |
attttgaaagtcacctttgaaacaaaccacaaagga |
7424066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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