View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_5 (Length: 574)
Name: NF13849_low_5
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 41744761 - 41744236
Alignment:
| Q |
1 |
tatatacaacattgttgcaatagaactctattagtatccatcggtcttagatcaactgataaaaatataaaagttgttaggtcatatatcgtgattaggg |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41744761 |
tatacacaacattgttgcaatagaactctattagtatccatcgatcttagatcaactgataaaaatataaaagttgttaggtcatatatcgtgattaggg |
41744662 |
T |
|
| Q |
101 |
ttcaaacacaaacttctgcacttatgtgtatgaatttctaacatatgttatcatttcatctatttatnnnnnnnnn---------gactcgtaaagatga |
191 |
Q |
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| T |
41744661 |
ttcaaatccaaacttctgcacttatgtgtatgaatttctaacatatgttatcatttcatctatttatataaaataaaataaaaaagactcgtaaagatga |
41744562 |
T |
|
| Q |
192 |
atttatgtgtatgagtttcatcatattagaataaagtatcttgagagtctagagtagactagaagatagagtatgaccgtaagatgaataataaaataaa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
41744561 |
atttatgtgtatgagtttcatcatattagaataaagtatcttgagagtctagagtagacgagaagatagagtatgatcgtaagatgaataataaaataaa |
41744462 |
T |
|
| Q |
292 |
gtacagagatgttgacg------cgagtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaag |
385 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41744461 |
gtacagagatgttgatgtagaaacgagtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaag |
41744362 |
T |
|
| Q |
386 |
aattttatgatcgtaaacaagagtaataaggagtaatgtcataaacatatatataaatacatatgatgagaaaagacgatgtctattttagggtaaacaa |
485 |
Q |
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|||||||||| | |||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41744361 |
aattttatgaccataaacaagagtaatgaggactaatttcataaacatatatataaatacatatgatgagaaaagacgacgtctattttagggtaaacaa |
41744262 |
T |
|
| Q |
486 |
tgagaaatgatggtgtctattgtgta |
511 |
Q |
| |
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| T |
41744261 |
tgagaaatgatggtgtctattgtgta |
41744236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 18784973 - 18785090
Alignment:
| Q |
311 |
agtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaagaattttatgatcgtaaacaagagta |
410 |
Q |
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||||||||||||||| ||||||||| ||||| |||||||||| || ||||||| |||||||||| ||| || |||||||| ||| |||||||||||| |
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| T |
18784973 |
agtcgtgtttatgaaatggattaatcaagaggatagggtagtaatctaaacgtcttgatgggggaaataataaagaatttattgactataaacaagagta |
18785072 |
T |
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| Q |
411 |
ataaggagtaatgtcata |
428 |
Q |
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| T |
18785073 |
ataagaagtaatgtcata |
18785090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 454
Target Start/End: Original strand, 34635485 - 34635625
Alignment:
| Q |
318 |
tttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggta------atgatgaagaattttatgatcgtaaacaagagtaa |
411 |
Q |
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||||||||||| |||||| || ||| || ||||||||||||||| | |||||||||| | |||||||||| ||||| || | || ||||||| | |
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| T |
34635485 |
tttatgaattgaattaataaaaaga-taaggtagtgatataaacttcttgatggggggaggggggatgatgaagagttttacga-ctcaatcaagagtga |
34635582 |
T |
|
| Q |
412 |
taaggagtaatgtcataaacatatatataaatacatatgatga |
454 |
Q |
| |
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| ||| ||||||||||| || |||||||||||||||||||||| |
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| T |
34635583 |
tgaggggtaatgtcatatacttatatataaatacatatgatga |
34635625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 5943822 - 5943878
Alignment:
| Q |
252 |
agaagatagagtatgaccgtaagatgaataataaaataaagtacagagatgttgacg |
308 |
Q |
| |
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|||| |||||||||| || ||||||||||||||||||||| || || |||||||||| |
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| T |
5943822 |
agaaaatagagtatgtccataagatgaataataaaataaaatagagggatgttgacg |
5943878 |
T |
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