View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_7 (Length: 570)
Name: NF13849_low_7
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 39 - 414
Target Start/End: Original strand, 46712503 - 46712880
Alignment:
| Q |
39 |
atatctaaagtgaactatttagtgcgtgacttgtaagatcaaatccttttacaaaaatgatattattattatgagcatatctaattccatcaaggtaata |
138 |
Q |
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| T |
46712503 |
atatctaaagtgaactctttagtctgtgacttgtaagagaaactccttttacaaaaattatattattattatgagcatatctaattccatcaaggtaata |
46712602 |
T |
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| Q |
139 |
atttaatactcacataacccagaatttacataatattggtagttattttgctaattgataatgattactactacagttaattccct--nnnnnnnntgat |
236 |
Q |
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| T |
46712603 |
atttaatactcacataacccagaatttacataatattggtagttattttgctaaatgataatgattactactacagttaattccctaaaaaaaaaatgat |
46712702 |
T |
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| Q |
237 |
ttctacaattaatggttacaaaatatgtcattttaatctcaagtatatgaaatattgtctaatgtactctacaacaacttaaccccagggactacagtgc |
336 |
Q |
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| T |
46712703 |
tactacaattaatggttacaaaatatgtcattttaatctcaagtatatgaaatattgtctcatgtagtctacaacaacttaaccccagggactacagtgc |
46712802 |
T |
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| Q |
337 |
aaatttcattcaatttaatgactannnnnnnnnnnnatacgattgcatttaaaacagggtgaaatatctgagtctaaa |
414 |
Q |
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| T |
46712803 |
aaatttcattcaatttaatgactaatttttatttttatacgattgcatttaaaacagggtgaaatatctgagtctaaa |
46712880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 421 - 554
Target Start/End: Original strand, 46712941 - 46713074
Alignment:
| Q |
421 |
ggaattgtaattgtaaattattataaataacagtgtcactaattgtcattttatagatgttttagttgagatttgaacttctttctttgagtataatgtc |
520 |
Q |
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| T |
46712941 |
ggaattgtaattgtaaattattataaataacagtgtcactaattgtcattttatagatgttttagttgagatttgaacttctttctttgagtataatgcc |
46713040 |
T |
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| Q |
521 |
aagctcttattgagttgatacctcatggataatt |
554 |
Q |
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| T |
46713041 |
aagctcttattgagttgatacctcatggataatt |
46713074 |
T |
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