View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13849_low_8 (Length: 529)

Name: NF13849_low_8
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13849_low_8
NF13849_low_8
[»] chr8 (7 HSPs)
chr8 (151-514)||(10966784-10967148)
chr8 (42-115)||(10967176-10967248)
chr8 (367-427)||(41421169-41421229)
chr8 (35-84)||(43073454-43073503)
chr8 (21-88)||(30623283-30623351)
chr8 (369-409)||(42790107-42790147)
chr8 (369-409)||(42799647-42799687)
[»] chr7 (1 HSPs)
chr7 (367-514)||(29965742-29965889)
[»] chr5 (2 HSPs)
chr5 (35-85)||(9123863-9123913)
chr5 (2-78)||(23118035-23118112)
[»] chr4 (1 HSPs)
chr4 (32-79)||(34968341-34968388)
[»] chr3 (2 HSPs)
chr3 (20-78)||(7868722-7868780)
chr3 (20-85)||(22462305-22462370)
[»] chr2 (2 HSPs)
chr2 (24-85)||(41682394-41682455)
chr2 (21-84)||(35727431-35727495)
[»] chr1 (1 HSPs)
chr1 (37-78)||(6519900-6519941)


Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 151 - 514
Target Start/End: Complemental strand, 10967148 - 10966784
Alignment:
Q  151 atgtaaaaagtaaaaggacattaaattcatacttcgtacatgacactcgtccatgcttataataaggttatgacaatatatagtggcaatgatatccata 250  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10967148 atgtaaaaaataaaaggacattaaattcatacttcgtacatgacactcgtccatgcttataataaggttatgacaatatatagtggcaatgatatccata 10967049  T
Q  251 tacacacacaccactttaaacggtttaagacnnnnnnnnn-gtgagtgaaatagtgatatatgcatgcatatacaatgaataaggacataataaattatg 349  Q
    || ||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10967048 tatacacacaccactttaaacggtttaagacaaaaaaaaaagtgagtgaaatagtgatatatgcatgcatatacaatgaataaggacataataaattatg 10966949  T
Q  350 aaacaaaaaggtacatgcataccctggatagtaaggggtaggaactagaaaagcatctcctggatcagccaaacaaaacatgattaattcgtttgcccct 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10966948 aaacaaaaaggtacatgcataccctggatagtaaggggtaggaactagaaaagcatctcctggatcagccaaacaaaacatgattaattcgtttgcccct 10966849  T
Q  450 gttgcccctccactcatcaatatacggtttggatcaaatctcaccctaccacctctcacttttga 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10966848 gttgcccctccactcatcaatatacggtttggatcaaatctcaccctaccacctctcacttttga 10966784  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 10967248 - 10967176
Alignment:
Q  42 tattatgcattgtttttacccactgcgttaagctcacagggacactcattcgttgttttaatacgacttcaagt 115  Q
    |||||||||||||| ||| | | || ||||| ||||| ||||||||| | ||||||||||||||||||||||||    
T  10967248 tattatgcattgttcttatcaattgagttaaactcacggggacactcgt-cgttgttttaatacgacttcaagt 10967176  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 41421169 - 41421229
Alignment:
Q  367 cataccctggatagtaaggggtaggaactagaaaagcatctcctggatcagccaaacaaaa 427  Q
    ||||||||||||||||||| ||||| || | ||||||||| || ||||| |||||||||||    
T  41421169 cataccctggatagtaaggtgtaggcaccaaaaaagcatcaccaggatctgccaaacaaaa 41421229  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 43073454 - 43073503
Alignment:
Q  35 ttacatttattatgcattgtttttacccactgcgttaagctcacagggac 84  Q
    |||||| |||||||||||||||||||| |||| |||||||| || |||||    
T  43073454 ttacatatattatgcattgtttttaccaactgagttaagcttacggggac 43073503  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 30623351 - 30623283
Alignment:
Q  21 ttcgaacccca-actttacatttattatgcattgtttttacccactgcgttaagctcacagggacactc 88  Q
    ||||||||||| || || ||| |||||||||||||  ||||| |||| | |||||||||||||||||||    
T  30623351 ttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagctcacagggacactc 30623283  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 42790107 - 42790147
Alignment:
Q  369 taccctggatagtaaggggtaggaactagaaaagcatctcc 409  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  42790107 taccctggatagtaaggggtgggaacaagcaaagcatctcc 42790147  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 42799647 - 42799687
Alignment:
Q  369 taccctggatagtaaggggtaggaactagaaaagcatctcc 409  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  42799647 taccctggatagtaaggggtgggaacaagcaaagcatctcc 42799687  T

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Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 367 - 514
Target Start/End: Original strand, 29965742 - 29965889
Alignment:
Q  367 cataccctggatagtaaggggtaggaactagaaaagcatctcctggatcagccaaacaaaacatgattaattcgtttgcccctgttgcccctccactcat 466  Q
    ||||| ||||||| |||||| ||||||| | ||||||||| || |||||||||||||||||||||||||| || ||||| |||||||| || ||||||||    
T  29965742 catacgctggataataagggctaggaaccaaaaaagcatcaccaggatcagccaaacaaaacatgattaactcatttgctcctgttgctccaccactcat 29965841  T
Q  467 caatatacggtttggatcaaatctcaccctaccacctctcacttttga 514  Q
    |||||||||||  ||||||||||| |||||||||||||||||||||||    
T  29965842 caatatacggtcaggatcaaatcttaccctaccacctctcacttttga 29965889  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 9123863 - 9123913
Alignment:
Q  35 ttacatttattatgcattgtttttacccactgcgttaagctcacagggaca 85  Q
    |||||| ||||||||||||| |||||| |||| ||||||||||||||||||    
T  9123863 ttacatatattatgcattgtctttaccaactgagttaagctcacagggaca 9123913  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 23118035 - 23118112
Alignment:
Q  2 tttttggtggtatccagcattcgaaccccaa-ctttacatttattatgcattgtttttacccactgcgttaagctcac 78  Q
    ||||||||||| |||||  |||||||||||| | |||||| |||||||||||||  ||| | |||| |||||||||||    
T  23118035 tttttggtggtgtccagagttcgaaccccaaaccttacatatattatgcattgtccttatcaactgagttaagctcac 23118112  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 34968388 - 34968341
Alignment:
Q  32 actttacatttattatgcattgtttttacccactgcgttaagctcaca 79  Q
    ||||||||| ||||||||||| |||||||| |||| ||||||||||||    
T  34968388 actttacatatattatgcattatttttaccaactgagttaagctcaca 34968341  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 7868780 - 7868722
Alignment:
Q  20 attcgaaccccaactttacatttattatgcattgtttttacccactgcgttaagctcac 78  Q
    |||||||||| |||||| ||| |||||||||||||| ||||| |||| | |||||||||    
T  7868780 attcgaacccgaactttgcatatattatgcattgttcttaccaactgagctaagctcac 7868722  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 22462370 - 22462305
Alignment:
Q  20 attcgaaccccaactttacatttattatgcattgtttttacccactgcgttaagctcacagggaca 85  Q
    |||||||||| ||| |||||| |||||||||||||  ||| | |||| ||||||||||| ||||||    
T  22462370 attcgaacccaaacattacatatattatgcattgtccttatcaactgagttaagctcacggggaca 22462305  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 41682394 - 41682455
Alignment:
Q  24 gaaccccaactttacatttattatgcattgtttttacccactgcgttaagctcacagggaca 85  Q
    |||||| ||| |||||| ||||||||||| ||| |||| |||| |||||||||||| |||||    
T  41682394 gaaccctaaccttacatatattatgcattatttataccaactgagttaagctcacaaggaca 41682455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 35727495 - 35727431
Alignment:
Q  21 ttcgaaccccaa-ctttacatttattatgcattgtttttacccactgcgttaagctcacagggac 84  Q
    |||||||||||| | || ||| |||||||||||||| ||||| |||| ||||||||||| |||||    
T  35727495 ttcgaaccccaaaccttgcatatattatgcattgttcttaccaactgagttaagctcacggggac 35727431  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 6519900 - 6519941
Alignment:
Q  37 acatttattatgcattgtttttacccactgcgttaagctcac 78  Q
    |||| |||||||||||||| ||||| ||||||||||||||||    
T  6519900 acatatattatgcattgttcttaccaactgcgttaagctcac 6519941  T

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