View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13849_low_9 (Length: 529)
Name: NF13849_low_9
Description: NF13849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13849_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 201 - 480
Target Start/End: Complemental strand, 22286705 - 22286434
Alignment:
| Q |
201 |
acatggttcaacaacaataaacaacttaagcaccaaaacaactgaatttttctaatgtgcctcaaaatacaaacataggaaaaacaacagaaactataca |
300 |
Q |
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| T |
22286705 |
acatggttcaacagcaataaacaacttaaggaccacaagaactgaatttt-ctaatgtgcctcaaaatacaaccatacaaaaaacagcagaaactataca |
22286607 |
T |
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| Q |
301 |
ttggttacataaatatggttcatattacaac-acctatacctctgaatatttctgcgttcacgtaacgttacatatgccgcgtcacagaaaactctcaag |
399 |
Q |
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| T |
22286606 |
ttgcttacataaatacggttcacattacaaccacctatacctctaaacttttttgcgttcacgt-----tacatatgccgcgtcacaaaaaactc--aaa |
22286514 |
T |
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| Q |
400 |
catagaaggagagaagtagacagtctaggataagcagaagcctttctagtagcatctgcattacctttgccagatgcattg |
480 |
Q |
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| T |
22286513 |
cat-gaaggagagaagcagacggtctaggataagcagaagcctttctagtagcatccgcattacctttgccggatgcattg |
22286434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 22302759 - 22302694
Alignment:
| Q |
12 |
ccaaatattatgtttcagccaaaacttatcttctaaaagcataatactaaggataaagtttcaaat |
77 |
Q |
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| T |
22302759 |
ccaaatattatgtttcagccaaaacttatcttctaaaagcataatactatggataaagtttcaaat |
22302694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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