View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1384_high_4 (Length: 339)

Name: NF1384_high_4
Description: NF1384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1384_high_4
NF1384_high_4
[»] chr4 (2 HSPs)
chr4 (30-325)||(55335915-55336210)
chr4 (84-292)||(55330516-55330724)
[»] chr2 (19 HSPs)
chr2 (89-262)||(8403663-8403836)
chr2 (189-313)||(8376194-8376318)
chr2 (189-313)||(8405568-8405692)
chr2 (189-313)||(8395880-8396004)
chr2 (89-152)||(8368100-8368163)
chr2 (89-152)||(8401247-8401310)
chr2 (89-152)||(8422824-8422887)
chr2 (70-134)||(8405747-8405811)
chr2 (189-313)||(8430839-8430963)
chr2 (189-311)||(8411690-8411812)
chr2 (189-311)||(8433788-8433910)
chr2 (89-134)||(8376094-8376139)
chr2 (89-134)||(8411867-8411912)
chr2 (89-134)||(8431018-8431063)
chr2 (89-134)||(8433965-8434010)
chr2 (189-241)||(8416844-8416896)
chr2 (89-130)||(8416952-8416993)
chr2 (70-134)||(8395761-8395825)
chr2 (104-148)||(8429632-8429676)
[»] scaffold1738 (1 HSPs)
scaffold1738 (189-313)||(26-150)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 325
Target Start/End: Complemental strand, 55336210 - 55335915
Alignment:
Q  30 ggattttggtcagctatggttcctgtgatggcaggatcaatggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaatgt 129  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336210 ggattttggtcagctatggtacctgtgatggcaggatcaatggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaatgt 55336111  T
Q  130 atagaaactgtggtggattctttaagatgttgggagagagtattgaaagcacacttgaggagaaagatttggaaaaaagagaaaatggtgagatatttga 229  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336110 atagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgaggagaaagatttggaaaaaagagaaaatggtgagatatttga 55336011  T
Q  230 aatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaaaatctgctgcctgttgcatggaaggaattgctataga 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  55336010 aatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaaaatctgctgcctgttgcatggaaggaatttctataga 55335915  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 84 - 292
Target Start/End: Complemental strand, 55330724 - 55330516
Alignment:
Q  84 aatggttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattctttaagatgttgggagagagtattgaaagcacac 183  Q
    |||| |||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||| ||||| |||||| ||||| | ||||    |||     
T  55330724 aatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacat 55330625  T
Q  184 ttgaggagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgc 283  Q
    | || ||||||||||| || |  ||||||||||| ||| ||||||||||||||||||| |||||||| ||||||| |||||||||| | ||| | |||||    
T  55330624 tggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgc 55330525  T
Q  284 ttcaaaatc 292  Q
    |||||||||    
T  55330524 ttcaaaatc 55330516  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 262
Target Start/End: Complemental strand, 8403836 - 8403663
Alignment:
Q  89 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattctttaagatgttgggagagagtattgaaagcacacttgag 188  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| || | |||| |||||   |||||   |   ||||     
T  8403836 ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaagaaattattgaa 8403737  T
Q  189 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgt 262  Q
    |||||||||||| | ||||||||||||| |||| | ||||| ||||| || ||||||   || |||||||||||    
T  8403736 gagaaagatttgaataaaagagaaaatgatgaggtgtttgagatgaagattgcattgcaattgggaagaagtgt 8403663  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 8376194 - 8376318
Alignment:
Q  189 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaa 288  Q
    ||||||||||| || |||||||||||||| ||| ||||||||||||||||||| |||   || ||||||||||| || ||||| ||  ||||||| ||||    
T  8376194 gagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctcaa 8376293  T
Q  289 aatctgctgcctgttgcatggaagg 313  Q
    |||| ||| | ||| ||||||||||    
T  8376294 aatcagcttcttgtcgcatggaagg 8376318  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 8405692 - 8405568
Alignment:
Q  189 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaa 288  Q
    ||||||||||| || |||||||||||||| ||| ||||||||||||||||||| |||   || ||||||||||| |||||||| ||  ||||||| ||||    
T  8405692 gagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatcaa 8405593  T
Q  289 aatctgctgcctgttgcatggaagg 313  Q
    |||| ||| | | | ||||||||||    
T  8405592 aatcagcttcttatcgcatggaagg 8405568  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 8395880 - 8396004
Alignment:
Q  189 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaa 288  Q
    ||||||||||| || |||||||||||||| ||| ||||||||||||||||||| |||   || ||||||||||| || ||||| ||  ||||||| ||||    
T  8395880 gagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatcaa 8395979  T
Q  289 aatctgctgcctgttgcatggaagg 313  Q
    |||| ||| | | | ||||||||||    
T  8395980 aatcagcttcttatcgcatggaagg 8396004  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 8368163 - 8368100
Alignment:
Q  89 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattcttt 152  Q
    |||||||||||||||||||||||||||||| | |||||||||||||   |||||||||||||||    
T  8368163 ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattcttt 8368100  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 8401247 - 8401310
Alignment:
Q  89 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattcttt 152  Q
    |||||||||||||||||||||||||||||| | |||||||||||||   |||||||||||||||    
T  8401247 ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattcttt 8401310  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 8422824 - 8422887
Alignment:
Q  89 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattcttt 152  Q
    |||||||||||||||||||||||||||||| | |||||||||||||   |||||||||||||||    
T  8422824 ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattcttt 8422887  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 8405811 - 8405747
Alignment:
Q  70 tggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 134  Q
    |||||| ||||||||||  |||||| ||||||||||||||||| ||||| |||||||||||||||    
T  8405811 tggcttctgcaatcaatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 8430963 - 8430839
Alignment:
Q  189 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaa 288  Q
    ||||||||||| || |||||||||||||| ||| ||||||||||||| ||||| |||   || |||| |||||| || ||||||||  ||||||| ||||    
T  8430963 gagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgtatcagagctaagggaacttgcatcaa 8430864  T
Q  289 aatctgctgcctgttgcatggaagg 313  Q
    |||| ||| | | | ||||||||||    
T  8430863 aatcagcttcttatcgcatggaagg 8430839  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 311
Target Start/End: Complemental strand, 8411812 - 8411690
Alignment:
Q  189 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaa 288  Q
    ||||||||||| || |||||||||||||| ||| |||||||| |||||||||| |||   || |||||||||||  | ||||| ||  ||||||| ||||    
T  8411812 gagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctcaa 8411713  T
Q  289 aatctgctgcctgttgcatggaa 311  Q
    |||| ||| | ||| ||||||||    
T  8411712 aatcagcttcttgtcgcatggaa 8411690  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 311
Target Start/End: Complemental strand, 8433910 - 8433788
Alignment:
Q  189 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaa 288  Q
    ||||||||||| || |||||||||||||| ||| |||||||| |||||||||| |||   || |||||||||||  | ||||| ||  ||||||| ||||    
T  8433910 gagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctcaa 8433811  T
Q  289 aatctgctgcctgttgcatggaa 311  Q
    |||| ||| | ||| ||||||||    
T  8433810 aatcagcttcttgtcgcatggaa 8433788  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 8376094 - 8376139
Alignment:
Q  89 ttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 134  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
T  8376094 ttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 8411912 - 8411867
Alignment:
Q  89 ttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 134  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
T  8411912 ttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 8431063 - 8431018
Alignment:
Q  89 ttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 134  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
T  8431063 ttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 8434010 - 8433965
Alignment:
Q  89 ttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 134  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
T  8434010 ttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 8416896 - 8416844
Alignment:
Q  189 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggc 241  Q
    ||||||||||| || |||||||||||||| ||| |||||||||||||||||||    
T  8416896 gagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggc 8416844  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 8416993 - 8416952
Alignment:
Q  89 ttttgagcatggtggacaagttggtatggtgtttgaaatgta 130  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  8416993 ttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 8395761 - 8395825
Alignment:
Q  70 tggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaatgtataga 134  Q
    |||||| |||||| |||  |||||| |||||||||||| |||| ||||| |||||||||||||||    
T  8395761 tggcttctgcaataaatacttttgaacatggtggacaaattggcatggtttttgaaatgtataga 8395825  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 8429676 - 8429632
Alignment:
Q  104 acaagttggtatggtgtttgaaatgtatagaaactgtggtggatt 148  Q
    ||||||||||||| ||||| | ||||||||||||||| |||||||    
T  8429676 acaagttggtatgatgtttcagatgtatagaaactgtagtggatt 8429632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1738 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 26 - 150
Alignment:
Q  189 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaa 288  Q
    ||||||||||| || |||||||||||||| ||| ||||||||||||||||||| |||   || ||||||||||| || ||||| ||  ||||||| ||||    
T  26 gagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatcaa 125  T
Q  289 aatctgctgcctgttgcatggaagg 313  Q
    |||| ||| | ||| |||| |||||    
T  126 aatcagcttcttgtcgcatcgaagg 150  T

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