View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1384_low_11 (Length: 267)
Name: NF1384_low_11
Description: NF1384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1384_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 19398699 - 19398584
Alignment:
| Q |
126 |
aagactttgaataatataatttctttgaacctcaagttttaaacttggtaccaaattattcaaaacttatcatattacgattacgattggtaaatgttta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19398699 |
aagactttgaataatataatttctttgaacctcaagttttaaacttggtaccaaattattcaaaacttatcatattacgattacgattggtaaatgttta |
19398600 |
T |
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| Q |
226 |
attgatactatattgt |
241 |
Q |
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||||||||||| |||| |
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| T |
19398599 |
attgatactattttgt |
19398584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 19374664 - 19374564
Alignment:
| Q |
136 |
ataatataatttctttgaacctcaagttttaaacttggtaccaaattattcaaaacttatcatattacgattacgattggtaaatgtttaattgatacta |
235 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19374664 |
ataatataatttctttgaacctcatgtttaaaacttggtaccaaattattcaaaacttatcatattacgattacgattggtaaatgtttaattgatacta |
19374565 |
T |
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| Q |
236 |
t |
236 |
Q |
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| T |
19374564 |
t |
19374564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 18102417 - 18102308
Alignment:
| Q |
126 |
aagactttgaataatataatttctttgaacctcaagttttaaacttggtaccaaattattcaaaacttatcatattacgattacgattggtaaatgttta |
225 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
18102417 |
aagacttggaataatataatttctttgaacctcatgttttaaacttggtgccaaattattcaaaacttatcatattac------gattggaaaatgttta |
18102324 |
T |
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| Q |
226 |
attgatactatattgt |
241 |
Q |
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||||||||||| |||| |
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| T |
18102323 |
attgatactattttgt |
18102308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 19398797 - 19398745
Alignment:
| Q |
45 |
agaaagtatgtggacaacagtgtcaattgatacaaatggggtctgattgttag |
97 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19398797 |
agaaagtatgtggacaacagtttcaattgatacaaatggggtctgattgttag |
19398745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 19374747 - 19374695
Alignment:
| Q |
45 |
agaaagtatgtggacaacagtgtcaattgatacaaatggggtctgattgttag |
97 |
Q |
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||||||||||||||||||| | || |||||||||||||||||||||||||||| |
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| T |
19374747 |
agaaagtatgtggacaacaatttcgattgatacaaatggggtctgattgttag |
19374695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 17949363 - 17949303
Alignment:
| Q |
126 |
aagactttgaataatataatttctttgaa-cctcaagttttaaacttggtaccaaattatt |
185 |
Q |
| |
|
||||||| |||| ||| |||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
17949363 |
aagacttagaattataaaatttctttgaaacctcatgttttaaacttggtgccaaattatt |
17949303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 19413121 - 19413062
Alignment:
| Q |
126 |
aagactttgaataatataatttctttgaacctcaagttttaaacttggtaccaaattatt |
185 |
Q |
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||||||| |||| ||| |||||||||||| |||| |||||||| ||||| |||||||||| |
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| T |
19413121 |
aagacttggaattatagaatttctttgaagctcatgttttaaaattggttccaaattatt |
19413062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 19423509 - 19423468
Alignment:
| Q |
144 |
atttctttgaacctcaagttttaaacttggtaccaaattatt |
185 |
Q |
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|||||||||||||||| |||||||| ||||| |||||||||| |
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| T |
19423509 |
atttctttgaacctcatgttttaaaattggttccaaattatt |
19423468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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