View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1384_low_3 (Length: 460)
Name: NF1384_low_3
Description: NF1384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1384_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 13769763 - 13769893
Alignment:
| Q |
12 |
agagactaaactatggatcttctgattttgcatattctgcttactccttagtaattgatcacgtttcttaattgatacaatatttttgttattttcaaat |
111 |
Q |
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| T |
13769763 |
agagactgaactatagatcttctgattttgcatattctgcttactccttagtaattgatcacgtttcttaattgatacaatatttttgttattttcaaat |
13769862 |
T |
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| Q |
112 |
ttatgttatctgcatctaaatttactgagca |
142 |
Q |
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| T |
13769863 |
ttatgttatctgcatctaaatttactgagca |
13769893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 13752220 - 13752316
Alignment:
| Q |
23 |
tatggatcttctgattttgcatattctgcttactccttagtaattgatcacgtttcttaattgatacaatatttttgttattttcaaatttatgtta |
119 |
Q |
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| T |
13752220 |
tatggatcttctgattttgcatattctgcttactccttagtaagtgatcatgtttcttaattgatacaatatttttgttattttcaaatttatgtta |
13752316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 13769961 - 13770034
Alignment:
| Q |
231 |
attcattctcatgatactcatcattattacatccttnnnnnnnnttataattttgagtatacttctaactttaa |
304 |
Q |
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| T |
13769961 |
attcattctcatgatactcatcattattacatccttaaaaaaatttataattttgagtatacttctaattttaa |
13770034 |
T |
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