View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1384_low_4 (Length: 414)

Name: NF1384_low_4
Description: NF1384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1384_low_4
NF1384_low_4
[»] chr7 (8 HSPs)
chr7 (14-312)||(45026301-45026599)
chr7 (270-312)||(19816267-19816309)
chr7 (179-307)||(23283791-23283920)
chr7 (270-312)||(24044084-24044126)
chr7 (270-312)||(34853394-34853436)
chr7 (270-312)||(36683505-36683547)
chr7 (270-312)||(42456557-42456599)
chr7 (270-312)||(47814676-47814718)
[»] chr4 (11 HSPs)
chr4 (14-312)||(33757424-33757723)
chr4 (182-254)||(198926-198998)
chr4 (181-256)||(37275148-37275223)
chr4 (270-312)||(199002-199044)
chr4 (270-312)||(12640627-12640669)
chr4 (270-312)||(20075528-20075570)
chr4 (270-312)||(20422134-20422176)
chr4 (270-312)||(36111257-36111299)
chr4 (270-312)||(52869450-52869492)
chr4 (270-312)||(55816491-55816533)
chr4 (179-256)||(37275724-37275801)
[»] chr3 (8 HSPs)
chr3 (179-256)||(37104412-37104489)
chr3 (181-256)||(37104990-37105065)
chr3 (270-312)||(25025805-25025847)
chr3 (270-312)||(38279412-38279454)
chr3 (273-307)||(38280302-38280336)
chr3 (270-312)||(44868659-44868701)
chr3 (270-312)||(55281838-55281880)
chr3 (181-256)||(21811939-21812015)
[»] chr2 (8 HSPs)
chr2 (194-260)||(32472042-32472108)
chr2 (270-308)||(3230135-3230173)
chr2 (270-312)||(6849291-6849333)
chr2 (270-312)||(10883290-10883332)
chr2 (270-312)||(28224429-28224471)
chr2 (271-312)||(16887586-16887627)
chr2 (270-307)||(33847881-33847918)
chr2 (270-307)||(40165881-40165918)
[»] chr1 (3 HSPs)
chr1 (179-256)||(3621981-3622058)
chr1 (270-312)||(42839704-42839746)
chr1 (270-307)||(7782732-7782769)
[»] chr8 (2 HSPs)
chr8 (270-312)||(43591010-43591052)
chr8 (274-310)||(16880563-16880599)
[»] chr5 (1 HSPs)
chr5 (179-256)||(2457703-2457780)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 45026599 - 45026301
Alignment:
Q  14 agatccggcgtttatttttcataatgtgagggaaagataagctaatattgaccacgttaatagtaacaaatgcctacagtctgcataatattatgaggtg 113  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  45026599 agatccggcgtttgtttttcataatgtgagggaaagataagctaatattgaccacgttaatagtaacaaacgcttacagtctgcataatattatgcggtg 45026500  T
Q  114 acaaacaactggagcagcagaatcaatttctaatgcccatggaataatgtaagatgcatacacgttgagaggttgaagaaagtgacaagaaaaatatagt 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45026499 acaaacaattggagcagcagaatcaatttctaatgcccatggaataatgtaagatccatacacgttgagaggttgaagaaagtgacaagaaaaatatagt 45026400  T
Q  214 gtggacaacctatagtaaattcagtgttccctttcaatctaattgttnnnnnnnnnttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||         ||| ||||||||||||||||||||||||||||| |||||||||    
T  45026399 gtggacaacctatagtaaattcagtgttctctttcaatctaattgttaaaaaaactttctcatggtgggaaaggattggtctttcccatatgaacacac 45026301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 19816309 - 19816267
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  19816309 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 19816267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 23283791 - 23283920
Alignment:
Q  179 tgagaggttgaagaaagtgacaagaaaaatatagtgtggacaacctatagtaaattcagtgttccctttcaatctaattg-ttnnnnnnnnnttcccatg 277  Q
    |||||||||||||| | ||| |||||| ||| | | |||||| ||||||  ||| |||||||||||| ||||||||| || ||         ||||||||    
T  23283791 tgagaggttgaagacaatgagaagaaagatacaatatggacagcctataacaaaatcagtgttccctatcaatctaactgtttaaaaaaacattcccatg 23283890  T
Q  278 gtgggaaaggattggtctttcccatgtgaa 307  Q
    |||||||||||||   ||||||||||||||    
T  23283891 gtgggaaaggattcccctttcccatgtgaa 23283920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 24044084 - 24044126
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  24044084 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 24044126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 34853436 - 34853394
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  34853436 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 34853394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 36683505 - 36683547
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  36683505 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 36683547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 42456557 - 42456599
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  42456557 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 42456599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 47814676 - 47814718
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  47814676 ttcccatggtgggaaaggattaagctttcccatgtgaacacac 47814718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 33757723 - 33757424
Alignment:
Q  14 agatccggcgtttatttttcataatgtgagggaaagataagctaatattgaccacgttaatagtaacaaatgcctacagtctgcataatattatgaggtg 113  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  33757723 agatccggcgtttgtttttcataatgtgagggaaagataagctaatattgaccacgttaatagtaacaaacgcctacagtctgcataatattatgcggtg 33757624  T
Q  114 acaaacaactggagcagcagaatcaatttctaatgcccatggaataatgtaagatgcatacacgttgagaggttgaagaaagtgacaagaaaaatatagt 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33757623 acaaacaattggagcagcagaatcaatttctaatgcccatggaataatgtaagatgcatacacgttgagaggttgaagaaagtgacaagaaaaatatagt 33757524  T
Q  214 gtggacaacctatagtaaattcagtgttccctttcaatctaattgtt-nnnnnnnnnttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||          |||| || ||||||||||||||| ||||||||| |||||||||    
T  33757523 gtggacaacctatagtaaattcaatgttccctctcaatttaattgttaaaaaaaactttcctatagtgggaaaggattggcctttcccatatgaacacac 33757424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 198926 - 198998
Alignment:
Q  182 gaggttgaagaaagtgacaagaaaaatatagtgtggacaacctatagtaaattcagtgttccctttcaatcta 254  Q
    ||||||||||||||||| |||||| |||||||||||| | | ||||||||| ||| |||||||| || |||||    
T  198926 gaggttgaagaaagtgagaagaaagatatagtgtggatagcttatagtaaaatcaatgttccctatccatcta 198998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 37275223 - 37275148
Alignment:
Q  181 agaggttgaagaaagtgacaagaaaaatatagtgtggacaacctatagtaaattcagtgttccctttcaatctaat 256  Q
    ||||||||| || ||||| || ||| ||||||||||||||  |||||||||  ||| |||||||||| ||||||||    
T  37275223 agaggttgatgacagtgagaaaaaacatatagtgtggacagtctatagtaagatcaatgttcccttttaatctaat 37275148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 199044 - 199002
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  199044 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 199002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 12640627 - 12640669
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  12640627 ttcccatggtgggaaaggattaagctttcccatgtgaacacac 12640669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 20075570 - 20075528
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  20075570 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 20075528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 20422176 - 20422134
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  20422176 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 20422134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 36111257 - 36111299
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  36111257 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 36111299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 52869492 - 52869450
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  52869492 ttcccatggtgggaaaggattcacctttcccatgtgaacacac 52869450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 55816491 - 55816533
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  55816491 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 55816533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 37275724 - 37275801
Alignment:
Q  179 tgagaggttgaagaaagtgacaagaaaaatatagtgtggacaacctatagtaaattcagtgttccctttcaatctaat 256  Q
    |||||||||||||| | ||| |||||| ||||||| ||||||  ||||  |||| ||| |||||||||| ||||||||    
T  37275724 tgagaggttgaagacaatgagaagaaagatatagtatggacagtctatgataaaatcaatgttcccttttaatctaat 37275801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 37104489 - 37104412
Alignment:
Q  179 tgagaggttgaagaaagtgacaagaaaaatatagtgtggacaacctatagtaaattcagtgttccctttcaatctaat 256  Q
    |||||||||||||| | ||| |||||| ||||||||||||||||||||  |||| ||| |||||||||| ||||||||    
T  37104489 tgagaggttgaagacaatgagaagaaagatatagtgtggacaacctatgataaaatcaatgttcccttttaatctaat 37104412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 37104990 - 37105065
Alignment:
Q  181 agaggttgaagaaagtgacaagaaaaatatagtgtggacaacctatagtaaattcagtgttccctttcaatctaat 256  Q
    ||||||||| || ||||| || ||| ||||||||||||||  |||||||||  ||| |||||||||| ||||||||    
T  37104990 agaggttgatgacagtgagaaaaaacatatagtgtggacagtctatagtaagatcaatgttcccttttaatctaat 37105065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 25025805 - 25025847
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  25025805 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 25025847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 38279454 - 38279412
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  38279454 ttcccatggtgggaaaggattcacctttcccatgtgaacacac 38279412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 38280302 - 38280336
Alignment:
Q  273 ccatggtgggaaaggattggtctttcccatgtgaa 307  Q
    |||||||||||||||||||| ||||||||||||||    
T  38280302 ccatggtgggaaaggattggcctttcccatgtgaa 38280336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 44868659 - 44868701
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  44868659 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 44868701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 55281880 - 55281838
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  55281880 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 55281838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 21812015 - 21811939
Alignment:
Q  181 agaggttgaagaaagtgacaagaaaa-atatagtgtggacaacctatagtaaattcagtgttccctttcaatctaat 256  Q
    ||||||||| || ||||| || |||| ||||||||||||||  |||||||||  ||| |||||||||| ||||||||    
T  21812015 agaggttgatgacagtgagaaaaaaacatatagtgtggacagtctatagtaagatcaatgttcccttttaatctaat 21811939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 32472042 - 32472108
Alignment:
Q  194 agtgacaagaaaaatatagtgtggacaacctatagtaaattcagtgttccctttcaatctaattgtt 260  Q
    ||||| |||||| ||||| ||| |||| | |||| |||| |||||||||||||||||||||||||||    
T  32472042 agtgagaagaaagatatattgtagacagcttataataaaatcagtgttccctttcaatctaattgtt 32472108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 3230135 - 3230173
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaac 308  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  3230135 ttcccatggtggaaaaggattggcctttcccatgtgaac 3230173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 6849333 - 6849291
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  6849333 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 6849291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 10883332 - 10883290
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  10883332 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 10883290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 28224429 - 28224471
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  28224429 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 28224471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 16887627 - 16887586
Alignment:
Q  271 tcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  16887627 tcccatggtgggaaaggattaacctttcccatgtgaacacac 16887586  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 33847918 - 33847881
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaa 307  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  33847918 ttcccatggtggaaaaggattggcctttcccatgtgaa 33847881  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 40165918 - 40165881
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaa 307  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  40165918 ttcccatggtggaaaatgattggtctttcccatgtgaa 40165881  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 3622058 - 3621981
Alignment:
Q  179 tgagaggttgaagaaagtgacaagaaaaatatagtgtggacaacctatagtaaattcagtgttccctttcaatctaat 256  Q
    |||||||||||||| | ||| |||||| ||||||||| |||| |||||  |||| ||| |||||||||| ||||||||    
T  3622058 tgagaggttgaagacaatgagaagaaagatatagtgtagacagcctatgataaaatcaatgttcccttttaatctaat 3621981  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 42839746 - 42839704
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  42839746 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 42839704  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 7782732 - 7782769
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaa 307  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  7782732 ttcccatggtaggaaaggattggcctttcccatgtgaa 7782769  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 43591052 - 43591010
Alignment:
Q  270 ttcccatggtgggaaaggattggtctttcccatgtgaacacac 312  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  43591052 ttcccatggtgggaaaggattaacctttcccatgtgaacacac 43591010  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 16880563 - 16880599
Alignment:
Q  274 catggtgggaaaggattggtctttcccatgtgaacac 310  Q
    |||||||||||||||||  ||||||||||||||||||    
T  16880563 catggtgggaaaggattaatctttcccatgtgaacac 16880599  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 2457780 - 2457703
Alignment:
Q  179 tgagaggttgaagaaagtgacaagaaaaatatagtgtggacaacctatagtaaattcagtgttccctttcaatctaat 256  Q
    |||||||||||||| | ||| |||||| |||||||| ||||| |||||  |||| ||| |||||||||| ||| ||||    
T  2457780 tgagaggttgaagacaatgagaagaaagatatagtgcggacagcctatgataaaatcaatgttcccttttaatttaat 2457703  T

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