View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13850_high_1 (Length: 701)

Name: NF13850_high_1
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13850_high_1
NF13850_high_1
[»] chr1 (12 HSPs)
chr1 (11-683)||(6496923-6497602)
chr1 (201-672)||(6510100-6510574)
chr1 (112-427)||(6514384-6514690)
chr1 (223-464)||(6502468-6502709)
chr1 (495-672)||(6502773-6502950)
chr1 (473-677)||(6514774-6514978)
chr1 (544-667)||(6525528-6525651)
chr1 (244-377)||(6525868-6526001)
chr1 (564-662)||(47775329-47775427)
chr1 (244-365)||(47771526-47771647)
chr1 (244-365)||(47775678-47775799)
chr1 (301-426)||(47710892-47711017)
[»] scaffold0341 (3 HSPs)
scaffold0341 (201-672)||(11780-12254)
scaffold0341 (201-464)||(4124-4387)
scaffold0341 (495-672)||(4452-4629)
[»] chr5 (6 HSPs)
chr5 (503-665)||(28859701-28859863)
chr5 (289-354)||(28843804-28843869)
chr5 (504-665)||(28854315-28854476)
chr5 (604-662)||(27368356-27368414)
chr5 (604-665)||(28828714-28828775)
chr5 (595-663)||(469779-469847)
[»] chr3 (1 HSPs)
chr3 (598-662)||(3103480-3103544)


Alignment Details
Target: chr1 (Bit Score: 629; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 11 - 683
Target Start/End: Original strand, 6496923 - 6497602
Alignment:
Q  11 taatactcaattgatgactatatctttatgtgttacatacatgaagatgaaacatgctcatgtat-ttacatgaatatgactgaaattaatccaacaact 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6496923 taatactcaattgatgactatatctttatgtgttacatacatgaagatgaaacatgctcatgtatattacatgaatatgactgaaattaatccaacaact 6497022  T
Q  110 accgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497023 accgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatg 6497122  T
Q  210 aaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaaca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  6497123 aaatgcaggttccaaaggcattgggagagtaactgaatcactatttagcatcactactacagtagccatgcttggcctgctagctacattctcttgaaca 6497222  T
Q  310 caaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497223 caaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcc 6497322  T
Q  410 tccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataatacacttctacatgaaatatat------gatgacatgaaaagtatg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| |||||||||    
T  6497323 tccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataatacacttctacatgaaatatatgatgacgatgacataaaaagtatg 6497422  T
Q  504 acttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaat 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497423 acttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaat 6497522  T
Q  604 acatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaatttggacaagta 683  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497523 acatccgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaatttggacaagta 6497602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 201 - 672
Target Start/End: Original strand, 6510100 - 6510574
Alignment:
Q  201 atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510100 atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc 6510199  T
Q  301 tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct 400  Q
    |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| || | |||||||||| |||||||||| || ||      
T  6510200 tcttgaacacaaagtaatccaatatgaatacatctaaaaatttcatttcgtgaatcattgtttaaagtagaatctatgataattgttgcagtaccatcaa 6510299  T
Q  401 tccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataa-tacacttct--acatgaaatatatgatgacatgaaa 497  Q
    ||||||| ||||||||||||||||||||  ||||| |||||||  |  ||  ||||||||||| | |||||||  |||||||| |||||| |||||||||    
T  6510300 tccaatttctccatgcctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttctaaacatgaaagatatgacgacatgaaa 6510399  T
Q  498 agtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaa 597  Q
    |||||||||||||||||| || ||||| || ||||||||| |||| ||||||||||||||||||| ||||||||| ||||| | |||||||||||| |||    
T  6510400 agtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaa 6510499  T
Q  598 ctgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat 672  Q
    || || ||||| || || |||||||| ||||| |||||  |||| ||||||||||||||||||||||||||||||    
T  6510500 ctaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaaacaat 6510574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 112 - 427
Target Start/End: Original strand, 6514384 - 6514690
Alignment:
Q  112 cgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatgaa 211  Q
    |||||| | |||| ||||||||||| ||||||||||||||||||||| |||||||||||  | ||||||||||||||| |   |         |||||||    
T  6514384 cgaggaaatagctgtgtatttgaagccccattgactgattcttgagcagaactatgacctgacgatttcatatcttgaggccct---------atatgaa 6514474  T
Q  212 atgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacaca 311  Q
    ||||||||| |||||| |||||||||||||| |||   ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  6514475 atgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctcttgaacaca 6514574  T
Q  312 aagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcctc 411  Q
    ||||||||||||||| ||||||||||  || |||||| |||| ||||||||||| || |||||||||||| ||| |||||| |||||||||||||| |||    
T  6514575 aagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaatgttggatctatgatatttgctgcagtcccctccttccaatttctc 6514674  T
Q  412 catgcctgcacaaatt 427  Q
    ||||||| ||||||||    
T  6514675 catgcctacacaaatt 6514690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 223 - 464
Target Start/End: Original strand, 6502468 - 6502709
Alignment:
Q  223 aaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaa 322  Q
    ||||||||||| |||||||| || || ||||||||||||||||||| |||||||||| |||| ||  |  ||| ||||||||||||||||||||||||||    
T  6502468 aaaggcattggaagagtaacagagtcgctattaagcatcactacaatagaagccatggttggtctatttactatattctcttgaacacaaagtaatccaa 6502567  T
Q  323 tatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcac 422  Q
    |||| |||||||| |  |||||||||||||||||||||||||| || |  ||||||||| |||||||||| |||||  ||||||| |||||||||| |||    
T  6502568 tatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaatttctccatgcctacac 6502667  T
Q  423 aaatttgtccaaacgcaaataaaatactaggttagatataat 464  Q
    |||||| |||| | ||| |||  || ||| ||||||||||||    
T  6502668 aaatttatccagatgcatatatcattctatgttagatataat 6502709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 495 - 672
Target Start/End: Original strand, 6502773 - 6502950
Alignment:
Q  495 aaaagtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccg 594  Q
    |||| |||||||||||||||| || ||||| || ||||||||| |||| ||||||| ||| ||||| | ||||||||| ||||||||||||||||||||     
T  6502773 aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcaccacttacaatttcaagaaccaatatacca 6502872  T
Q  595 aaactgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat 672  Q
    |||||||| |||||||| || || |||||||||||||||||  |||| ||||||||||||||||| ||||||||||||    
T  6502873 aaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatccgctacaaaacaat 6502950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 473 - 677
Target Start/End: Original strand, 6514774 - 6514978
Alignment:
Q  473 acatgaaatatatgatgacatgaaaagtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttac 572  Q
    |||| ||| |||||||  ||||| || ||||||||||||||||||| ||||| || ||||||||| |||| || |||  ||| ||||||| |||||||||    
T  6514774 acataaaagatatgattgcatgacaattatgacttacaaagctcgagagatattccgtattctccccatcacggatgtaactattttttgtaccacttac 6514873  T
Q  573 gatttcaagaaccaatataccgaaactgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat 672  Q
     ||||||||||| |||||||| ||||| || |||||||| ||   |||||||||||| ||| | ||||| || ||||||||||| |||||||| ||||||    
T  6514874 aatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccactacataacaat 6514973  T
Q  673 ttgga 677  Q
     ||||    
T  6514974 atgga 6514978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 544 - 667
Target Start/End: Complemental strand, 6525651 - 6525528
Alignment:
Q  544 cgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaatacatctgacttcactgaaaattgtccgtgcatagcatatt 643  Q
    |||||||||||||||||    |||||||  || ||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |    
T  6525651 cgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatact 6525552  T
Q  644 caggtgccatatatccactacaaa 667  Q
    | ||||||||||||||||| ||||    
T  6525551 ccggtgccatatatccactgcaaa 6525528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 244 - 377
Target Start/End: Complemental strand, 6526001 - 6525868
Alignment:
Q  244 gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt 343  Q
    |||| |||||||||||| | ||||| |||||||||  |||||||||||||| |||| ||||||||||||||||| ||||| || || |||||||  ||||    
T  6526001 gaatgactattaagcattagtacaatagaagccatagttggcctgctagctgcattttcttgaacacaaagtaacccaatgtggatgcatctcattattt 6525902  T
Q  344 catttcgtgaatcattgtttaacgtgggatctat 377  Q
    | ||   ||||||||||||||| |||||||||||    
T  6525901 cgttcactgaatcattgtttaatgtgggatctat 6525868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 564 - 662
Target Start/End: Complemental strand, 47775427 - 47775329
Alignment:
Q  564 accacttacgatttcaagaaccaatataccgaaactgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccact 662  Q
    ||||||||  || |||||||||||||  |||||||| || ||||| || || || ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  47775427 accacttaaaatctcaagaaccaatactccgaaactaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatatatccact 47775329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 244 - 365
Target Start/End: Complemental strand, 47771647 - 47771526
Alignment:
Q  244 gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt 343  Q
    |||| |||||||||||| | | |||||| ||||||| |||| |||  | ||||||| ||||||||||||||||| |||||||| || |||||||  ||||    
T  47771647 gaataactattaagcatgagtgcaacagtagccatggttggtctgtcaactacattttcttgaacacaaagtaagccaatatggatgcatctcattattt 47771548  T
Q  344 catttcgtgaatcattgtttaa 365  Q
    |||||  ||||  |||||||||    
T  47771547 catttgctgaaatattgtttaa 47771526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 244 - 365
Target Start/End: Complemental strand, 47775799 - 47775678
Alignment:
Q  244 gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt 343  Q
    |||| |||||||||||| | | |||||| ||||||| |||| |||  | ||||||| |||||||||||||||||  ||||||| ||||||||||  ||||    
T  47775799 gaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatacatctcattattt 47775700  T
Q  344 catttcgtgaatcattgtttaa 365  Q
    |||||  ||||  |||||||||    
T  47775699 catttgctgaaatattgtttaa 47775678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 47710892 - 47711017
Alignment:
Q  301 tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct 400  Q
    ||||||||||| |||||  |||| || || |||||||  ||||||||| ||||| ||||| |||| |  |||||||| ||| ||||    || ||||||     
T  47710892 tcttgaacacatagtaaagcaatgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtaccctccc 47710991  T
Q  401 tccaattcctccatgcctgcacaaat 426  Q
    ||||| ||||||||||||||||||||    
T  47710992 tccaactcctccatgcctgcacaaat 47711017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 272; Significance: 1e-151; HSPs: 3)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 201 - 672
Target Start/End: Original strand, 11780 - 12254
Alignment:
Q  201 atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780 atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc 11879  T
Q  301 tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct 400  Q
    |||||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||| || |  ||||||||| |||||||||| || ||||    
T  11880 tcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccttcct 11979  T
Q  401 tccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataa-tacacttct--acatgaaatatatgatgacatgaaa 497  Q
    ||||||| ||||||||||||||||||||  ||||| |||||||  |  ||  ||||||||||| | |||||||  |||||||| |||||| |||||||||    
T  11980 tccaatttctccatgcctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttctaaacatgaaagatatgacgacatgaaa 12079  T
Q  498 agtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaa 597  Q
    |||||||||||||||||| || ||||| || ||||||||| |||| ||||||||||||||||||| ||||||||| ||||| | |||||||||||| |||    
T  12080 agtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaa 12179  T
Q  598 ctgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat 672  Q
    || || ||||| || || |||||||| ||||| |||||  |||| ||||||||||||||||||||||||||||||    
T  12180 ctaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaaacaat 12254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 201 - 464
Target Start/End: Original strand, 4124 - 4387
Alignment:
Q  201 atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4124 atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc 4223  T
Q  301 tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct 400  Q
    |||||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||| || |  ||||||||| |||||||||| |||||      
T  4224 tcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctc 4323  T
Q  401 tccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataat 464  Q
    ||||||| |||||||||| ||||||||| |||| | ||| |||  || ||| ||||||||||||    
T  4324 tccaatttctccatgcctacacaaatttatccagatgcatatatcattctatgttagatataat 4387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 495 - 672
Target Start/End: Original strand, 4452 - 4629
Alignment:
Q  495 aaaagtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccg 594  Q
    |||| |||||||||||||||| || ||||| || ||||||||| |||| ||||||| ||| ||||| | ||||||||| ||||||||||||||||||||     
T  4452 aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcaccacttacaatttcaagaaccaatatacca 4551  T
Q  595 aaactgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat 672  Q
    |||||||| |||||||| || || |||||||||||||||||  |||| ||||||||||||||||| ||||||||||||    
T  4552 aaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatccgctacaaaacaat 4629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 503 - 665
Target Start/End: Original strand, 28859701 - 28859863
Alignment:
Q  503 gacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaa 602  Q
    |||||||||||||| |||||| ||| ||||| ||| | |  ||||||| ||| || |||   |||||||  || ||||||||||  | ||| ||||| ||    
T  28859701 gacttacaaagctcaatagatcctccgtattttccccgtgacgaatgcaactattcttttggccacttataatctcaagaaccagaacaccaaaactaaa 28859800  T
Q  603 tacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactaca 665  Q
     |||||||| ||||||||||||| ||| |||||  |||| ||||||||||||||||| |||||    
T  28859801 gacatctgatttcactgaaaattctccatgcattacatactcaggtgccatatatccgctaca 28859863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 28843804 - 28843869
Alignment:
Q  289 ctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaa 354  Q
    ||||||||||| ||||| ||||||||||| |||||||| || |||||||  |||||||||| ||||    
T  28843804 ctagctacattgtcttgcacacaaagtaacccaatatgaatgcatctcatgatttcatttcttgaa 28843869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 665
Target Start/End: Original strand, 28854315 - 28854476
Alignment:
Q  504 acttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaat 603  Q
    ||||||||||||| |||||| ||| ||| | ||| |||   || ||||||| || |||   |||||||  || |||||||| | || ||| ||||||||     
T  28854315 acttacaaagctcaatagatcctccgtaatttccccatgatgagtgccactattctttaggccacttataatctcaagaactagtacaccaaaactgaag 28854414  T
Q  604 acatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactaca 665  Q
    |||||||| || |||||||||| ||| |||||  |||| |||||||||||||| || |||||    
T  28854415 acatctgattttactgaaaattctccatgcattacatactcaggtgccatatacccgctaca 28854476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 662
Target Start/End: Original strand, 27368356 - 27368414
Alignment:
Q  604 acatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccact 662  Q
    |||||||| || || ||||||| ||| ||||| ||||| ||||||||||||||||||||    
T  27368356 acatctgattttaccgaaaattctccatgcatcgcatactcaggtgccatatatccact 27368414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 665
Target Start/End: Original strand, 28828714 - 28828775
Alignment:
Q  604 acatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactaca 665  Q
    |||||||| ||||| ||||||| ||| |||||  |||| ||||||||||| |||||||||||    
T  28828714 acatctgatttcaccgaaaattctccatgcattacatactcaggtgccatgtatccactaca 28828775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 663
Target Start/End: Original strand, 469779 - 469847
Alignment:
Q  595 aaactgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccacta 663  Q
    |||||||| ||||| || ||| | ||||||||||||||||| |||||||| || | |||||| ||||||    
T  469779 aaactgaacacatcggatttctcagaaaattgtccgtgcattgcatattccggagacatataaccacta 469847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 598 - 662
Target Start/End: Complemental strand, 3103544 - 3103480
Alignment:
Q  598 ctgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccact 662  Q
    ||||| ||||||||||| ||||||||   ||| | |||||||||||| || ||||||||||||||    
T  3103544 ctgaaaacatctgactttactgaaaacaatccttccatagcatattctggagccatatatccact 3103480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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