View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_high_13 (Length: 425)
Name: NF13850_high_13
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 11582926 - 11583213
Alignment:
| Q |
16 |
atatggaaaatggcatttaatagcttctacactcatttc----tccaagctgcctattacaagtttctatattgcattgctcccacttcatttgaatt-g |
110 |
Q |
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| T |
11582926 |
atatgaaatatgacatttaatagcttctgcactcatttccgtttccaagctgcctattacaagtttctatattgcattgctcccacttaatttgaatttg |
11583025 |
T |
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| Q |
111 |
aaaggccacttatcaactttcaaagaccattggccagtgaatgacttactagccgcctaataattagtatccttgaaaaaccaattagtgaaccatttaa |
210 |
Q |
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| T |
11583026 |
aaaggccacatatcaactttcaaagaccatcggccaatgaatgacacactagccgcctaatagttagtatccttgaaaaagcaattagtgaaccatttaa |
11583125 |
T |
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| Q |
211 |
cttatcactgcaacaactatgattgattacaa--tttcagatttcaattttatctctgcacgcatctttcctcctttttctgtaccta |
296 |
Q |
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| T |
11583126 |
cttatcactacaacaactatgattgattacaatttttcagatttcaattttatctctgcacgcatctttcctcctttttctataccta |
11583213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 9045315 - 9045358
Alignment:
| Q |
13 |
ggcatatggaaaatggcatttaatagcttctacactcatttctc |
56 |
Q |
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| T |
9045315 |
ggcataaggaaaatgacatttaatagctactacactcatttctc |
9045358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 5334449 - 5334491
Alignment:
| Q |
11 |
aaggcatatggaaaatggcatttaatagcttctacactcattt |
53 |
Q |
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| T |
5334449 |
aaggcataaggaaaatgacatttaataacttctacactcattt |
5334491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 26981216 - 26981256
Alignment:
| Q |
15 |
catatggaaaatggcatttaatagcttctacactcatttct |
55 |
Q |
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|||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
26981216 |
cataaggaaaatgacatttaataacttctacactcatttct |
26981256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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