View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13850_high_16 (Length: 347)

Name: NF13850_high_16
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13850_high_16
NF13850_high_16
[»] chr8 (2 HSPs)
chr8 (2-328)||(41311027-41311353)
chr8 (7-328)||(43164710-43165031)
[»] chr7 (6 HSPs)
chr7 (7-294)||(30165608-30165883)
chr7 (2-326)||(30124981-30125305)
chr7 (105-220)||(28180965-28181080)
chr7 (135-245)||(30131068-30131178)
chr7 (135-241)||(30120068-30120174)
chr7 (4-37)||(30130934-30130967)
[»] chr2 (1 HSPs)
chr2 (120-246)||(21426577-21426703)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 2 - 328
Target Start/End: Original strand, 41311027 - 41311353
Alignment:
Q  2 attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311027 attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 41311126  T
Q  102 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311127 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 41311226  T
Q  202 aatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 301  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311227 aaccagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 41311326  T
Q  302 tgttcccattgattacctctcaatgag 328  Q
    |||||||||||||||||||||||||||    
T  41311327 tgttcccattgattacctctcaatgag 41311353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 43164710 - 43165031
Alignment:
Q  7 gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa 106  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| |||||||||||   | | |||  ||    
T  43164710 gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa 43164809  T
Q  107 tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca 206  Q
    |||||||||||| ||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||| ||    
T  43164810 tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca 43164909  T
Q  207 gccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttc 306  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| | ||  ||| ||||||||  |||||||||||||||||||||||||||||||||    
T  43164910 gccaatgaatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttc 43165009  T
Q  307 ccattgattacctctcaatgag 328  Q
    ||||| |||| |||||||||||    
T  43165010 ccattcattagctctcaatgag 43165031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 30165883 - 30165608
Alignment:
Q  7 gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa 106  Q
    |||||||||||||||||||||||||| ||||| | |||||| |||||||||||| |||||||    |||||||| ||||||||||||||               
T  30165883 gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- 30165795  T
Q  107 tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca 206  Q
     ||| | || || ||| ||| |||||  |||||| || ||||  ||||||||||||||||||||||||||||||||||||||||| || || ||||| ||    
T  30165794 -cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca 30165696  T
Q  207 gccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaa 294  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||  ||| |||||||||||| |||||||||    
T  30165695 gccaatgaatagaaccattgaagaacgacccaactctgggaccaccttcagagcatgcagggttcctataaggcaaatgagaatcaaa 30165608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 30124981 - 30125305
Alignment:
Q  2 attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 101  Q
    |||| |||||| |||||||||| |||||||| || |  |||||| | | |||||| ||| |||||||  |||||||| | ||||||||||  |  || ||    
T  30124981 attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag 30125080  T
Q  102 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 201  Q
    |||||||  |||||||| ||| ||| |||||  | ||||||| ||||  |||||||||||||||||||| |||||||||| | |  |||| || || ||     
T  30125081 agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatg 30125180  T
Q  202 aatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 301  Q
    || ||||||||||||||  |||||||||||| ||||||||||||| |  || |||||||  ||||||||| |||||||||||| ||||||||||||||||    
T  30125181 aaccagccaatgaatagtcccattcaagaacaacccaactctgggccatccgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaatt 30125280  T
Q  302 tgttcccattgattacctctcaatg 326  Q
    |  ||||| | |||| |||||||||    
T  30125281 tcctcccacttattagctctcaatg 30125305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 28180965 - 28181080
Alignment:
Q  105 aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaat 204  Q
    |||| ||||||||| ||||||| |||||  | ||||||| |||||||||||||||||||||||||||||||||| | ||||  |||| || || |||||     
T  28180965 aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac 28181064  T
Q  205 cagccaatgaatagaa 220  Q
    ||||||||||||||||    
T  28181065 cagccaatgaatagaa 28181080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 245
Target Start/End: Original strand, 30131068 - 30131178
Alignment:
Q  135 tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacga 234  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||||| ||   |||| || || ||||| ||||||||||||||  |||||||||||| |    
T  30131068 tctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattcaagaacaa 30131167  T
Q  235 cccaactctgg 245  Q
    ||| |||||||    
T  30131168 cccgactctgg 30131178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 30120068 - 30120174
Alignment:
Q  135 tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacga 234  Q
    ||||||| | |||| |||||||||||||||||||||||||||||| ||| |  |||| || || || || || |||||||||||  |||||||||||| |    
T  30120068 tctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaa 30120167  T
Q  235 cccaact 241  Q
    |||||||    
T  30120168 cccaact 30120174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
Q  4 tgtgtattcttgcatcacccatatcttaagtgta 37  Q
    ||||||||||||||||||||||||||||| ||||    
T  30130934 tgtgtattcttgcatcacccatatcttaactgta 30130967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 21426703 - 21426577
Alignment:
Q  120 catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaataga 219  Q
    ||||||| |||||  ||||||||| |||  ||||||||||||||| ||||||||||||||||   |  |||| |  || || || ||||||||||||||     
T  21426703 catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagc 21426604  T
Q  220 accattcaagaacgacccaactctggg 246  Q
     ||||| ||||||||||| ||||||||    
T  21426603 cccatttaagaacgacccgactctggg 21426577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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