View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13850_high_18 (Length: 318)

Name: NF13850_high_18
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13850_high_18
NF13850_high_18
[»] chr4 (5 HSPs)
chr4 (241-308)||(52528864-52528931)
chr4 (36-117)||(1678430-1678511)
chr4 (237-308)||(26720573-26720645)
chr4 (36-83)||(14586853-14586900)
chr4 (68-110)||(52529105-52529147)
[»] chr8 (4 HSPs)
chr8 (36-110)||(13863801-13863875)
chr8 (241-308)||(13863560-13863628)
chr8 (36-133)||(22781766-22781864)
chr8 (36-85)||(42313947-42313996)
[»] chr1 (4 HSPs)
chr1 (237-301)||(45118251-45118316)
chr1 (46-176)||(45118420-45118551)
chr1 (43-115)||(19768677-19768750)
chr1 (71-107)||(39076227-39076263)
[»] chr5 (1 HSPs)
chr5 (36-115)||(30463760-30463838)
[»] chr2 (2 HSPs)
chr2 (237-301)||(2985721-2985786)
chr2 (46-176)||(2985484-2985615)
[»] chr7 (1 HSPs)
chr7 (36-107)||(13761791-13761861)
[»] scaffold1095 (1 HSPs)
scaffold1095 (38-111)||(524-595)
[»] scaffold0036 (1 HSPs)
scaffold0036 (36-114)||(97747-97824)
[»] chr6 (2 HSPs)
chr6 (36-98)||(20910682-20910744)
chr6 (36-98)||(20925130-20925192)
[»] scaffold0005 (1 HSPs)
scaffold0005 (36-83)||(230474-230521)
[»] chr3 (1 HSPs)
chr3 (36-99)||(52126895-52126958)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 52528931 - 52528864
Alignment:
Q  241 ttctctattgtcattttttccccttctcaatttcccaacccacctttccttcccatctactctctctg 308  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  52528931 ttctctattgtcattttttccccttctcaatttcccaatccacgtttccttcccatctactctctctg 52528864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 1678511 - 1678430
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatcctaaataattggctccaaaaatttgaaatttgaatcc 117  Q
    |||||||||||||||||||||| ||||||||||| |||| ||| |||||| |||||||||  ||||||||||||||||||||    
T  1678511 tctaatcctagcaaacatgcaaaccctaattccacaaccttaaacctaaaaaattggctctcaaaatttgaaatttgaatcc 1678430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 26720573 - 26720645
Alignment:
Q  237 atccttctctattgtcatttt-ttccccttctcaatttcccaacccacctttccttcccatctactctctctg 308  Q
    |||||||| | |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  26720573 atccttctttgttgtcatttttttccccttctcaatttcccaatccacgtttccttcccatctactttctctg 26720645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 14586900 - 14586853
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatccta 83  Q
    ||||||||||||||||||||||  ||||||| ||||||||||| ||||    
T  14586900 tctaatcctagcaaacatgcaaatcctaattgcataaccctaaaccta 14586853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 52529147 - 52529105
Alignment:
Q  68 cataaccctaatcctaaataattggctccaaaaatttgaaatt 110  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||    
T  52529147 cataaccctaaacctaaaaaattgactccaaaaatttgaaatt 52529105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 13863875 - 13863801
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatcctaaataattggctccaaaaatttgaaatt 110  Q
    ||||||||||| |||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  13863875 tctaatcctaggaaacatacaaaccctaattccataaccctaaacctaaaaaattggctccaaaaatttgaaatt 13863801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 13863628 - 13863560
Alignment:
Q  241 ttctctattgtcatttttt-ccccttctcaatttcccaacccacctttccttcccatctactctctctg 308  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  13863628 ttctcaattgtcatttttttccccttctcaatttcccaatccacgtttccttcccatctactctctctg 13863560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 22781864 - 22781766
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatcctaaataattggctccaaaaatttgaaatttgaatc-caccttttcgttatgag 133  Q
    |||||||||| ||||||||||| ||||||||||| |||| ||| |||||| ||||||||||  |||||| ||||||||||| ||| ||||| |||||||    
T  22781864 tctaatcctaacaaacatgcaaaccctaattccacaaccttaaacctaaaaaattggctcccgaaatttcaaatttgaatctcacattttcattatgag 22781766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 42313996 - 42313947
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatcctaaa 85  Q
    ||||||||| |||||||||||| |||||||| | ||||||||||||||||    
T  42313996 tctaatcctggcaaacatgcaaaccctaattgcctaaccctaatcctaaa 42313947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 45118316 - 45118251
Alignment:
Q  237 atccttctctattgtca-ttttttccccttctcaatttcccaacccacctttccttcccatctact 301  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  45118316 atccttctctattgtcacttttttccccttctcaatttcccaatccacgtttccttcccatctact 45118251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 45118551 - 45118420
Alignment:
Q  46 gcaaacatgcaacccctaattccataaccctaatcctaaataatt-ggctccaaaaatttgaaatttgaat-ccaccttttcgttatgagctcgccaatt 143  Q
    ||||||||||   ||||||||||| |||||||| |||||| | || ||||||||| ||||||||||| ||| |||| ||||| ||||||||| ||  |||    
T  45118551 gcaaacatgcttaccctaattcca-aaccctaaacctaaaaattttggctccaaatatttgaaatttaaatcccacattttcattatgagcttgcgtatt 45118453  T
Q  144 cccaatggtatattacactgtctcctaacattg 176  Q
    ||||||| |  ||| |||| ||| |||||||||    
T  45118452 cccaatgatgcattccactatcttctaacattg 45118420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 19768677 - 19768750
Alignment:
Q  43 ctagcaaacatgcaacccctaattccataaccctaatcctaaataat-tggctccaaaaatttgaaatttgaat 115  Q
    |||||||| |||||| |||||||| |  || |||||||||||| ||  ||||| ||||||||||||||||||||    
T  19768677 ctagcaaatatgcaaaccctaattgccaaatcctaatcctaaaaaaaatggcttcaaaaatttgaaatttgaat 19768750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 39076263 - 39076227
Alignment:
Q  71 aaccctaatcctaaataattggctccaaaaatttgaa 107  Q
    ||||||||||||||| || ||||||||||||||||||    
T  39076263 aaccctaatcctaaaaaaatggctccaaaaatttgaa 39076227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 30463760 - 30463838
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatcctaaataattggctccaaaaatttgaaatttgaat 115  Q
    |||||||||||||||||||||| ||||||||||| || ||||| |||||| ||||||||||  |||||||||||||||||    
T  30463760 tctaatcctagcaaacatgcaaaccctaattccacaatcctaaacctaaaaaattggctcc-caaatttgaaatttgaat 30463838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 2985721 - 2985786
Alignment:
Q  237 atccttctctattgtca-ttttttccccttctcaatttcccaacccacctttccttcccatctact 301  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||||    
T  2985721 atccttctctattgtcacttttttccccttctcaatttcccaatccatgtttccttcccatctact 2985786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 2985484 - 2985615
Alignment:
Q  46 gcaaacatgcaacccctaattccataaccctaatcctaaataatt-ggctccaaaaatttgaaatttgaat-ccaccttttcgttatgagctcgccaatt 143  Q
    ||||||||||   ||||||||||| |||||||| |||||| | || ||||||||| ||||||||||| ||| |||| ||||| ||||||||| ||  |||    
T  2985484 gcaaacatgcttaccctaattcca-aaccctaaacctaaaaattttggctccaaatatttgaaatttaaatcccacattttcattatgagcttgcgtatt 2985582  T
Q  144 cccaatggtatattacactgtctcctaacattg 176  Q
    ||||||| |  ||| |||| ||| |||||||||    
T  2985583 cccaatgatgcattccactatcttctaacattg 2985615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 13761791 - 13761861
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatcctaaataattggctccaaaaatttgaa 107  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||||||| || ||||| ||||||||||||    
T  13761791 tctaatcctagcaaacatgcaaaccctaattgcataaacctaatcctaaa-aaatggcttcaaaaatttgaa 13761861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 595 - 524
Alignment:
Q  38 taatcctagcaaacatgcaacccctaattccataaccctaatcctaaataattggctccaaaaatttgaaattt 111  Q
    |||||||||||||||||||| ||||||||  |||||||||||| |||| |||||||||  ||||||||||||||    
T  595 taatcctagcaaacatgcaaaccctaattgtataaccctaatcttaaaaaattggctc--aaaatttgaaattt 524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 97747 - 97824
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatcctaaataattggctccaaaaatttgaaatttgaa 114  Q
    |||||||||| ||||||||||| |||||||| ||||||| ||| |||||| ||||||  || |||||||||||||||||    
T  97747 tctaatcctaacaaacatgcaaaccctaattgcataaccgtaaacctaaaaaattggagcc-aaaatttgaaatttgaa 97824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 20910744 - 20910682
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatcctaaataattggctccaa 98  Q
    |||||||||||||||||||||| || | ||| | |||||||||||||||| || |||||||||    
T  20910744 tctaatcctagcaaacatgcaaaccttcattgcctaaccctaatcctaaaaaaatggctccaa 20910682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 20925192 - 20925130
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatcctaaataattggctccaa 98  Q
    |||||||||||||||||||||| || | ||| | |||||||||||||||| || |||||||||    
T  20925192 tctaatcctagcaaacatgcaaaccttcattgcctaaccctaatcctaaaaaaatggctccaa 20925130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 230474 - 230521
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatccta 83  Q
    ||||||||||||||||||||||  ||||||| ||||||||||| ||||    
T  230474 tctaatcctagcaaacatgcaaatcctaattgcataaccctaaaccta 230521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 52126895 - 52126958
Alignment:
Q  36 tctaatcctagcaaacatgcaacccctaattccataaccctaatcctaaataattggctccaaa 99  Q
    ||||||||||||||||||||   |||||||| | ||||||||||||||| |  |||||||||||    
T  52126895 tctaatcctagcaaacatgcttaccctaatttcttaaccctaatcctaagtttttggctccaaa 52126958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University