View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13850_high_21 (Length: 291)

Name: NF13850_high_21
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13850_high_21
NF13850_high_21
[»] chr3 (10 HSPs)
chr3 (1-273)||(26677875-26678152)
chr3 (2-130)||(26688230-26688362)
chr3 (225-273)||(25177961-25178009)
chr3 (169-275)||(26682425-26682531)
chr3 (225-273)||(6999443-6999491)
chr3 (225-273)||(31637711-31637759)
chr3 (225-275)||(16932875-16932925)
chr3 (222-267)||(32463348-32463393)
chr3 (225-275)||(30468640-30468690)
chr3 (225-273)||(51899387-51899435)
[»] scaffold0233 (1 HSPs)
scaffold0233 (225-275)||(19251-19301)
[»] chr5 (5 HSPs)
chr5 (225-273)||(33304934-33304982)
chr5 (225-275)||(22697557-22697607)
chr5 (225-267)||(26747102-26747144)
chr5 (225-275)||(31089556-31089606)
chr5 (225-273)||(20864123-20864171)
[»] chr4 (3 HSPs)
chr4 (225-273)||(6682888-6682936)
chr4 (225-275)||(36220728-36220778)
chr4 (225-273)||(48255095-48255143)
[»] chr1 (4 HSPs)
chr1 (225-273)||(35322461-35322509)
chr1 (225-275)||(14585961-14586011)
chr1 (225-275)||(45274244-45274294)
chr1 (229-273)||(45182398-45182442)
[»] scaffold1476 (1 HSPs)
scaffold1476 (229-273)||(1243-1287)
[»] chr6 (2 HSPs)
chr6 (225-273)||(13997161-13997209)
chr6 (225-273)||(6816246-6816294)
[»] chr8 (1 HSPs)
chr8 (225-275)||(17904655-17904705)
[»] chr7 (3 HSPs)
chr7 (225-275)||(5045602-5045652)
chr7 (225-273)||(36065834-36065882)
chr7 (225-273)||(48207632-48207680)
[»] chr2 (3 HSPs)
chr2 (225-275)||(12997381-12997431)
chr2 (225-275)||(26423348-26423398)
chr2 (241-273)||(17902988-17903020)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 26677875 - 26678152
Alignment:
Q  1 acttcctctttctacgaattttctattcccaatcggggtcttttgcttggacaattctcccctcaatgtctccatctcattgaataaatggtgaagttaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26677875 acttcctctttctacgaattttctattcccaatccgggtcttttgcttggacaattctcccctcaatgtctccatctcattgaataaatggtgaagttaa 26677974  T
Q  101 taacaaattattcaatgaagcaacaatatt---nnnnnnnnntaatcaataaaatttttattttagtttgtaggtactctctccgtcctaaaatgattga 197  Q
    ||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26677975 taacaaattattcaatgaagcaacaatattaaaaaaaaaaagtaatcaataaaatttttattttagtttgcaggtactctctccgtcctaaaatgattga 26678074  T
Q  198 tcttgtttga--nnnnnnnnnaaaggaataagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    ||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26678075 tcttgtttgatttttttttttaaaggaataagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 26678152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 26688362 - 26688230
Alignment:
Q  2 cttcctctttctacgaattttctattcccaatcggggtcttttgcttggacaattctcccctcaatgtctc----catctcattgaataaatggtgaagt 97  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  26688362 cttcctctttctaagaattttctattcccaatcggggtctttttcttggacaattctcccctcaatgtctccatccatctcattgaataaatggtgaagt 26688263  T
Q  98 taataacaaattattcaatgaagcaacaatatt 130  Q
    |||||||||| ||||| ||||||||||||||||    
T  26688262 taataacaaaatattcgatgaagcaacaatatt 26688230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 25178009 - 25177961
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25178009 aagcttatagcttttcattattgatcaaagtagaaatacaatgtggaat 25177961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 26682531 - 26682425
Alignment:
Q  169 aggtactctctccgtcctaaaatgattgatcttgtttgannnnnnnnnaaaggaataagcttatagctttccattattgatcaaagtagaaatacaatgt 268  Q
    ||||||||||||||||||||||||||| |||||||||||          ||| ||||||||||| ||||  ||||||||||||||| ||||||| |||||    
T  26682531 aggtactctctccgtcctaaaatgattcatcttgtttgattttttttttaagaaataagcttattgcttctcattattgatcaaagcagaaatataatgt 26682432  T
Q  269 ggaatat 275  Q
     ||||||    
T  26682431 agaatat 26682425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 6999443 - 6999491
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  6999443 aagcttatagcttttcattattgatcaaagaagaaatacaatgtggaat 6999491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 31637759 - 31637711
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  31637759 aagcttatagcttttcattattgatcaaagaagaaatacaatgtggaat 31637711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 16932875 - 16932925
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| ||||||| ||||||||||  ||||||||||||||||    
T  16932875 aagcttatagcttttcattattaatcaaagtagttatacaatgtggaatat 16932925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 32463348 - 32463393
Alignment:
Q  222 aataagcttatagctttccattattgatcaaagtagaaatacaatg 267  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||||    
T  32463348 aataagcttataggttttcattatggatcaaagtagaaatacaatg 32463393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 30468640 - 30468690
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| ||||||| || ||||||  |||||||||||||||||    
T  30468640 aagcttatagcttttcattattaattaaagtatgaatacaatgtggaatat 30468690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 51899387 - 51899435
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||| ||||||||||  |||||||| |||||    
T  51899387 aagcttatagcttttcattattaatcaaagtagttatacaatgaggaat 51899435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 19251 - 19301
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  19251 aagcttatagcttttcattattgatcaaagtaggaatacaatgtggaatat 19301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 33304934 - 33304982
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  33304934 aagcttatagcttttcattattgatcaaagaagaaatacaatgtggaat 33304982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 22697557 - 22697607
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| ||||||| |||||||||  |||||||||||||||||    
T  22697557 aagcttatagcttttcattattaatcaaagtatgaatacaatgtggaatat 22697607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 26747102 - 26747144
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatg 267  Q
    |||||||||||||| | |||||||||||||||||||| |||||    
T  26747102 aagcttatagcttttctttattgatcaaagtagaaatccaatg 26747144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 31089606 - 31089556
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| ||||||| || ||||||  |||||||||||||||||    
T  31089606 aagcttatagcttttcattattaattaaagtatgaatacaatgtggaatat 31089556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 20864171 - 20864123
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||| |||||||||  |||| ||||||||||    
T  20864171 aagcttatagcttttcattattaatcaaagtatgaatagaatgtggaat 20864123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 6682936 - 6682888
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  6682936 aagcttatagcttttcattattgatcaaagaagaaatacaatgtggaat 6682888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 36220728 - 36220778
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| ||||||| |||||||||  |||||||||||||||||    
T  36220728 aagcttatagcttttcattattaatcaaagtatgaatacaatgtggaatat 36220778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 48255143 - 48255095
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||| ||||||||||  |||||||| |||||    
T  48255143 aagcttatagcttttcattattaatcaaagtagttatacaatgaggaat 48255095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 35322509 - 35322461
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  35322509 aagcttatagcttttcattattgatcaaagaagaaatacaatgtggaat 35322461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 14586011 - 14585961
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| ||||||| |||||| |||  ||||||||||||||||    
T  14586011 aagcttatagcttttcattattaatcaaactagttatacaatgtggaatat 14585961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 45274244 - 45274294
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| ||||||| || ||||||  |||||||||||||||||    
T  45274244 aagcttatagcttttcattattaattaaagtatgaatacaatgtggaatat 45274294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 45182442 - 45182398
Alignment:
Q  229 ttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||| ||| |||||||||||||||||| |||||||| ||||||    
T  45182442 ttatagtttttcattattgatcaaagtagtaatacaatatggaat 45182398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 1243 - 1287
Alignment:
Q  229 ttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  1243 ttatagcttttcattattaatcaaagtagaaatacaatgtggaat 1287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 13997161 - 13997209
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  13997161 aagcttatagcttttcattattgatcaaagaataaatacaatgtggaat 13997209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 6816246 - 6816294
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||| ||||||||||  |||||||| |||||    
T  6816246 aagcttatagcttttcattattaatcaaagtagttatacaatgaggaat 6816294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 17904655 - 17904705
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| ||||||| |||||||||   ||||||||||||||||    
T  17904655 aagcttatagcttttcattattaatcaaagtatgtatacaatgtggaatat 17904705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 5045652 - 5045602
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    ||||||||| |||| ||||||| |||||||||  |||||||||||||||||    
T  5045652 aagcttataacttttcattattaatcaaagtatgaatacaatgtggaatat 5045602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 36065882 - 36065834
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    ||||||||| |||| |||||||||||||||||| |||| ||||| ||||    
T  36065882 aagcttataccttttcattattgatcaaagtagtaatataatgtagaat 36065834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 48207680 - 48207632
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaat 273  Q
    |||||||||||||| ||||||| ||||||||||  |||||||| |||||    
T  48207680 aagcttatagcttttcattattaatcaaagtagttatacaatgaggaat 48207632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 12997431 - 12997381
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| ||||||| || ||||||  |||||||||||||||||    
T  12997431 aagcttatagcttttcattattaattaaagtatgaatacaatgtggaatat 12997381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 26423398 - 26423348
Alignment:
Q  225 aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatat 275  Q
    |||||||||||||| ||||||| |||||||||  ||||||| |||||||||    
T  26423398 aagcttatagcttttcattattaatcaaagtatgaatacaacgtggaatat 26423348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 17903020 - 17902988
Alignment:
Q  241 attattgatcaaagtagaaatacaatgtggaat 273  Q
    ||||||| |||||||||||||||||||||||||    
T  17903020 attattggtcaaagtagaaatacaatgtggaat 17902988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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