View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_high_24 (Length: 239)
Name: NF13850_high_24
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 42525929 - 42525725
Alignment:
| Q |
19 |
attgagaaatatattataaaaattagaggtatttttt-ataatttatctagttgattttgattaattaatgcacaagtcatgcatgatcactaatttttc |
117 |
Q |
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| T |
42525929 |
attgagaaatatattataaaaattagaggtatttttttataatttatctagttgattttgattaattaatgcacaagtcatgcatgatcactaatttttc |
42525830 |
T |
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| Q |
118 |
atttttgtttatcttaacaggagttgagggagtggtgattgatatggctaaaaatgaagtggtcataaagggaatagtggatcctcaaggaatctgcaac |
217 |
Q |
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| T |
42525829 |
atttttgtttatcttaacaggagttgagggagtggtgattgatatggctaaaaatgaagtggtcataaagggaatagtggatcctcaaggaatctgcaat |
42525730 |
T |
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| Q |
218 |
attat |
222 |
Q |
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||||| |
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| T |
42525729 |
attat |
42525725 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 29280653 - 29280748
Alignment:
| Q |
113 |
ttttcatttttgtttatctt--aacaggagttgagggagtggtgattgatatggctaaaaatgaagtggtcataaagggaatagtggatcctcaag |
206 |
Q |
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||||| ||| |||||||||| |||||||||||||||||| || ||||| ||||||||||||||||| |||||| || |||||||| ||||||| |
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| T |
29280653 |
ttttcttttatgtttatcttttaacaggagttgagggagtagttattgacatggctaaaaatgaagttaccataaaaggtatagtggagcctcaag |
29280748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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