View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_high_26 (Length: 222)
Name: NF13850_high_26
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_high_26 |
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| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0302 (1 HSPs) |
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| [»] scaffold0084 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 4286756 - 4286944
Alignment:
| Q |
17 |
cagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggcgagaaggacacaacgagtggaaggaggctgatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
4286756 |
cagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgatt |
4286855 |
T |
|
| Q |
117 |
gttaccggaagagataatggtgcaggatcacatggtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286856 |
gttaccggaagagataatggtgcaggatcacatggtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatg |
4286944 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 4295227 - 4295415
Alignment:
| Q |
17 |
cagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggcgagaaggacacaacgagtggaaggaggctgatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
4295227 |
cagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgatt |
4295326 |
T |
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| Q |
117 |
gttaccggaagagataatggtgcaggatcacatggtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatg |
205 |
Q |
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| T |
4295327 |
gttaccggaagagataatggtgcaggatcacatggtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatg |
4295415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 34007 - 34192
Alignment:
| Q |
17 |
cagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggcgagaaggacacaacgagtggaaggaggctgatt |
116 |
Q |
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||||||||||||||||||||||| | | |||| ||||||||||||| ||||| ||||| ||||||||||| || ||||||||||||||||| ||||| |
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| T |
34007 |
cagagacttgagagtaacattcctaacctccacaagttgtgggcagtcaacagactggagattgggcgagaaagatgcaacgagtggaaggaggttgatt |
34106 |
T |
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| Q |
117 |
gttaccggaagagataatggtgcaggatcacatggtaacttttttaggattgtgcagacccaaactggtggtatctataacattca |
202 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
34107 |
gttaccggaagagataacggtgcaggatcacaaggtaacttttttaggattgtgcagactcaaactggtggtacctataacattca |
34192 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 15095 - 14904
Alignment:
| Q |
17 |
cagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggcgagaaggacacaacgagtggaaggaggctgatt |
116 |
Q |
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||||||||||||||| ||||||| | | |||| ||||||||||||| ||||| ||||| || || ||||| || | || ||||||||||| ||||| |
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| T |
15095 |
cagagacttgagagttacattcctaacatccacaagttgtgggcagtcaacagactggagattaggtgagaaagatgctacaagtggaaggagattgatt |
14996 |
T |
|
| Q |
117 |
gttaccggaagagataatggtgcaggatcacat---ggtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatg |
205 |
Q |
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|| || |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
14995 |
gtcactggaagagataatagtgcaggatcacaacaaggtaacttttttaggattgtgcagacccaaactagtggcaactataacattcaatg |
14904 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 17217 - 17408
Alignment:
| Q |
17 |
cagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggcgagaaggacacaacgagtggaaggaggctgatt |
116 |
Q |
| |
|
||||||||||||||| ||||||| | | |||| |||||||| | || | |||||||| || || ||||| || |||| ||||||||||| ||||| |
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| T |
17217 |
cagagacttgagagttacattcctaacatccacaagttgtgggaattcaagagattggacattaggtgagaaagatgcaacaagtggaaggagattgatt |
17316 |
T |
|
| Q |
117 |
gttaccggaagagataatggtgcaggatcacat---ggtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatg |
205 |
Q |
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|| || ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
17317 |
gtcactggaggagataatggtgcaggatcacaacaaggtaacttttttaggattgtgcagacccaaactagtggcaactataacattcaatg |
17408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 26100 - 25921
Alignment:
| Q |
17 |
cagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggcgagaaggacacaacgagtggaaggaggctgatt |
116 |
Q |
| |
|
||||||||||||||| ||||||| | | |||| ||||||||||||| ||||| ||||| || || ||||| || | || |||||||||||| ||||| |
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| T |
26100 |
cagagacttgagagttacattcctaacatccacaagttgtgggcagtcaacagactggagattaggtgagaaagatgctacaagtggaaggaggttgatt |
26001 |
T |
|
| Q |
117 |
gttaccggaagagataatggtgcaggatcacatggtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatg |
205 |
Q |
| |
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|| |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
26000 |
gtcaccggaagagataatgctgaagg---------taacttttttaggattgtgcagacccaaactggaggtaactataacattcaatg |
25921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 205
Target Start/End: Original strand, 44442839 - 44442994
Alignment:
| Q |
53 |
ttgtgggcagtcgacagattggaggttgggcgagaaggacacaacgagtggaaggaggctgattgttaccggaagagataatggtgcag---gatcacat |
149 |
Q |
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|||||||||||| |||| ||||| || ||||||| |||| |||||||||| |||||||| ||| |||||||||||| ||||| ||| ||||| | |
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| T |
44442839 |
ttgtgggcagtcatcagaatggagattaggcgagagggacgcaacgagtggtaggaggcttattaccaccggaagagatgatggtacagttggatcattt |
44442938 |
T |
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| Q |
150 |
ggtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatg |
205 |
Q |
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|||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
44442939 |
ggtaacttctttaggattgtgcagagccaaactcttggtatctataacatccaatg |
44442994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 21403940 - 21403786
Alignment:
| Q |
54 |
tgtgggcagtcgacagattggaggttgggcgagaaggacacaacgagtggaaggaggctgattgttaccggaagagataatggtgca---ggatcacatg |
150 |
Q |
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||||| ||||| ||||| ||||||||||| |||| |||| |||||| |||||| ||| | ||| | |||||||||||| || || || |||||| ||| |
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| T |
21403940 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21403841 |
T |
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| Q |
151 |
gtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatg |
205 |
Q |
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||||||| |||||||||||||| || | || | | ||||||| |||||| ||||| |
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|
| T |
21403840 |
gtaacttctttaggattgtgcaaactccaagtagaggtatctttaacatccaatg |
21403786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 21798432 - 21798278
Alignment:
| Q |
54 |
tgtgggcagtcgacagattggaggttgggcgagaaggacacaacgagtggaaggaggctgattgttaccggaagagataatggtgca---ggatcacatg |
150 |
Q |
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||||| ||||| ||||| ||||||||||| |||| |||| |||||| |||||| ||| | ||| | |||||||||||| || || || |||||| ||| |
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| T |
21798432 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21798333 |
T |
|
| Q |
151 |
gtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatg |
205 |
Q |
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|
||||||| |||||||||||||| || | || | | ||||||| |||||| ||||| |
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|
| T |
21798332 |
gtaacttctttaggattgtgcaaactccaagtagaggtatctttaacatccaatg |
21798278 |
T |
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