View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_high_5 (Length: 542)
Name: NF13850_high_5
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 164 - 523
Target Start/End: Complemental strand, 44204938 - 44204600
Alignment:
| Q |
164 |
tgtttcgccacgtaaacaacgtaggtctgaagtgaaatcaagtgatgttaaggaaagaggtaaagggagtgaaatgaggaaggggaagaatgttggagtt |
263 |
Q |
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| T |
44204938 |
tgtttcgccacgtaaacaacgtaggtctgaagtgaaatcaagtgatgttaaggaaagagggaaagggagtgaaatgaggaaggggaagaatgttggagtt |
44204839 |
T |
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| Q |
264 |
gattatgcgaaattaatccacggttatgataatatggtaattataagcttcttaatttcattgttatgtttatgtttttggttgaattagttaattgatt |
363 |
Q |
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| T |
44204838 |
gattatgcgaaattaatccacggttatgataatatggtaattataagcttcttaatttcattgttatgtttatgtttttggttgaatta----------- |
44204750 |
T |
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| Q |
364 |
tgagatgttagttttgagtttcatgtgttatgattatgatttatgaatgagtcatggttatgtatgtttgtgatcatcaataggcacctgctgaaagagt |
463 |
Q |
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| T |
44204749 |
----------gttttgagtttcatgtgttatgattatggtttatgaatgagtcatggttatgtatgtttgtgatcatcaataggcacctgctgaaagagt |
44204660 |
T |
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| Q |
464 |
gaaagccaagatgaagcttcagctttctgaaactggtaagtaaatagaagatcttattgg |
523 |
Q |
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| T |
44204659 |
gaaagccaagatgaagcttcagctttctgaaactggtaagtaaatagaagatcttattgg |
44204600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 44205096 - 44205006
Alignment:
| Q |
12 |
aggagcagagagagaaatagtagatatagtca------tcgtgatcgtgatcgtgatagtggtagaagccgaagccgaagcgattctgatg |
96 |
Q |
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| T |
44205096 |
aggagtagagagagaaatagtagatatagtgaccgtgatcgtgatcgtgatcgtgatagtggtagaagccgaagccgaagcgattctgatg |
44205006 |
T |
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