View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13850_low_10 (Length: 463)
Name: NF13850_low_10
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_10 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 14417111 - 14416676
Alignment:
| Q |
19 |
attttatctctctcaggaatgttagaagtatttgacaacaataatggctctaagagaatggattactttaaggtgtctctagtggaacctaattcaaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
14417111 |
attttatctctctcaggaatgttagaagtatttgacaacaataatggctttaagagaatgaattactttacggtgtctctagtggaacctaattcaaatg |
14417012 |
T |
|
| Q |
119 |
tttttggaggtgtagttgataagcttattgctgcatcattagtaaaggtatttctctaaagtgatacataatttatgttgattttcttataagcataatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
14417011 |
tttttggaggtgtagttgataagcttattgctgcatcattggtaaaggtatttctctcaagtgatacataatttatgttgattttcttataagcatattg |
14416912 |
T |
|
| Q |
219 |
tgaatgcaagttcttgggtgtctatggtattttctgcatgataaattgagcaaatttttgtggcatcgattttatgactttttaagaatcattttcaggt |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14416911 |
tgaatgcaagttcttgggtgtctattgtattttctgcatgatgaattgtgcaaatttttgtggcatcgattttatgactttttaagaatcattttcaggt |
14416812 |
T |
|
| Q |
319 |
caaagtggcttgttttactttggatggcaaaaatggtagctcgagtaacctgaatttggggccttcttcaataccaatatcccaatttgctgcttttggg |
418 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14416811 |
caaagtggcttgttttactttggatgacaaaaatggtagctcgagtaacctgaatttggggccttcttcaataccaatatcccaatttgctgcttttggg |
14416712 |
T |
|
| Q |
419 |
actccaactagtgctaccactcaaggtccttcatct |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
14416711 |
actccaactagtgctaccactcaaggtccttcatct |
14416676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 14427170 - 14426751
Alignment:
| Q |
19 |
attttatctctctcaggaatgttagaagtatttgacaacaataatggctctaagagaatggattactttaaggtgtctctagtggaacctaattcaaatg |
118 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| ||||||| ||||| ||||| |||||||||||||||| ||||||| ||||||| ||| | |
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|
| T |
14427170 |
attttatctctatcaggaatgttagaagaatttgacaacaaaaatggctttaagacaatgggttactttaaggtgtctttagtggatcctaatttaaacg |
14427071 |
T |
|
| Q |
119 |
tttttggaggtgtagttg---ataagcttattgctgcatcattagtaaaggtatttctctaaagtgatacataatttatgttgattttcttat----aag |
211 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| ||||| || |||||||||||||||| || ||||| || ||||||||||||||| || | ||| |
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|
| T |
14427070 |
ttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatgataaatgatttatgttgattttttttttttaaag |
14426971 |
T |
|
| Q |
212 |
cataatgtgaatgcaagttcttgggtgtctatggtattttctgcatgataaattgagcaaatttttgtggcatcgattttatgactttttaagaatcatt |
311 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||||| |||| | |||||| |||||||||||||||||||| |
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|
| T |
14426970 |
caaaatgtgaatgtaagttcttgggtgtctatagtattttctgcacgacgaattgagcaaatttt-gtgggaccgattt-atgactttttaagaatcatt |
14426873 |
T |
|
| Q |
312 |
ttcaggtcaaagtggcttgttttactttggatggcaaaaatggtagctcgagtaacctgaatttggggccttcttcaataccaatatcccaatttgctgc |
411 |
Q |
| |
|
||||||| | ||||| | ||||||||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||| | ||||| ||||||||||| |
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| T |
14426872 |
ttcaggttatagtgggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggtcttcttcaatgacgatatctcaatttgctgc |
14426773 |
T |
|
| Q |
412 |
ttttgggactccaactagtgct |
433 |
Q |
| |
|
| | ||||||||||||||||| |
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|
| T |
14426772 |
tcctaggactccaactagtgct |
14426751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 386
Target Start/End: Original strand, 4244649 - 4244900
Alignment:
| Q |
133 |
gttgataagcttattgctgcatcattagtaaaggtatttctctaaagtgatacataatttatgttgattttcttataagcataatgtgaatgcaagttct |
232 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||| | ||||| | |||||||||||||||| ||| || || | ||||||| || || |
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|
| T |
4244649 |
gttgataagcttattgcggcatcattggtaaaggtattgttctcatatgataaacaatttatgttgatttt-ttaaaatcacatcgtgaatgtaacttaa |
4244747 |
T |
|
| Q |
233 |
tgggtgtctatggtattttctgcatgataaattgagcaaatttttgtggcatcgattttatgactttttaagaatcattttcaggtcaaagtggcttgtt |
332 |
Q |
| |
|
||||||| || || |||||||||||| ||||| |||| ||||| ||||| ||||||||||||||||| |||| ||| ||| ||| |||| | ||| |
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|
| T |
4244748 |
tgggtgttgatagttttttctgcatgaaggattgatcaaa-ctttgttgcatcaattttatgactttttaataatcgtttacagatcacggtgggtagtt |
4244846 |
T |
|
| Q |
333 |
ttactttggatggcaaaaatggtagctcgagtaacctgaatttggggccttctt |
386 |
Q |
| |
|
|||||||| ||| ||||| | |||||||| |||| |||| | |||||||||| |
|
|
| T |
4244847 |
ttactttgagtggaaaaaaggctagctcgaataacttgaaagtcgggccttctt |
4244900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 452
Target Start/End: Complemental strand, 3409833 - 3409671
Alignment:
| Q |
290 |
ttatgactttttaagaatcattttcaggtcaaagtggcttgttttactttggatggcaaaaatggtagctcgagtaacctgaatttggggccttcttcaa |
389 |
Q |
| |
|
||||||||| |||| |||||||| ||||||| |||| | ||||||||||||||| || || | |||||||| |||| |||| | |||||||||||| |
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|
| T |
3409833 |
ttatgacttattaaaaatcatttacaggtcactgtgggtagttttactttggatgttaagaaggctagctcgaataacttgaaaattgggccttcttcag |
3409734 |
T |
|
| Q |
390 |
taccaatatcccaatttgctgcttttgggactccaactagtgctaccactcaaggtccttcat |
452 |
Q |
| |
|
| ||| |||||| ||||||||| ||||||||||| |||||||| |||||| ||||||| |
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|
| T |
3409733 |
tgccatcgtcccaaattgctgcttctgggactccaatcggtgctacccttcaagggccttcat |
3409671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 3410092 - 3409885
Alignment:
| Q |
31 |
tcaggaatgttagaagtatttgacaacaataatggctctaagagaatggattactttaaggtgtctctagtggaacctaattcaaatgtttttggaggtg |
130 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||| | ||| ||||||| | |||||||||||||||| |||| ||| ||| | ||| ||||||| |
|
|
| T |
3410092 |
tcaggcatgttagaagtatgtgacaacaatagtggttgtaaaagaatgggtaactttaaggtgtctctggtgggtcctgatttacgccctttgggaggtg |
3409993 |
T |
|
| Q |
131 |
tagt---tgataagcttattgctgcatcattagtaaaggtatttctctaaagtgatacataatttatgttgattttcttataagcataatgtgaatgcaa |
227 |
Q |
| |
|
| || | ||||||||||||| ||||| | |||||||||||| | | || ||||| | |||||||||||||||| ||| | | | ||||||||| || |
|
|
| T |
3409992 |
tggtggctaataagcttattgcagcatcttcagtaaaggtattgttttcaaatgataaacaatttatgttgattttttta-atgtacaatgtgaatttaa |
3409894 |
T |
|
| Q |
228 |
gttcttggg |
236 |
Q |
| |
|
||||||||| |
|
|
| T |
3409893 |
gttcttggg |
3409885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 312
Target Start/End: Original strand, 4251292 - 4251466
Alignment:
| Q |
135 |
tgataagcttattgctgcatcattagtaaaggtatttctctaaagtgatacataatttatgttgattttcttataagcataatgtgaatgcaagttcttg |
234 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||||| ||| || ||||| | |||||||||||||||| || ||||| | ||||||| || || || |
|
|
| T |
4251292 |
tgataagcttatcgcggcatcgttagtaaaggtatcgttcttaaatgatatacaatttatgttgatttt--taaaagcacatcgtgaatgtaactttatg |
4251389 |
T |
|
| Q |
235 |
ggtgtctatggtattttctgcatgataaattgagcaaatttttgtggcatcgattttatgactttttaagaatcattt |
312 |
Q |
| |
|
|||| || || |||||||||||| ||||| |||| ||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
4251390 |
ggtggtgatagttttttctgcatgaaggattgatcaaacttt-gttgcatcaattttatgactttttaagaatcattt |
4251466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 4867133 - 4867340
Alignment:
| Q |
51 |
tgacaacaataatggctctaagagaatggattactttaaggtgtctctagtggaacctaattcaaatgtttttggaggtgtagttg---ataagcttatt |
147 |
Q |
| |
|
||||||||| ||||| ||| |||||| |||||| |||||||||||||| | ||| ||||| |||| | ||||||||||| ||||| ||||| |
|
|
| T |
4867133 |
tgacaacaactatggcaataaaagaatgagttacttcaaggtgtctctagtaaaccctgattcacgccttttggtaggtgtagttgctgataagtttatt |
4867232 |
T |
|
| Q |
148 |
gctgcatcattagtaaaggtatttctctaaagtgatacataatttatgttgattttcttataagcataatgtgaatgcaagttcttgggtgtctatggta |
247 |
Q |
| |
|
|| |||||||||||||||||||| ||| || ||||| ||||||||||| |||||| ||| | | |||||||||| ||||||||| |||| || ||| |
|
|
| T |
4867233 |
gcggcatcattagtaaaggtattgttctcaaatgatagataatttatgtagatttt-ttaaatgtgcaatgtgaatgtaagttcttgtgtgttgattgta |
4867331 |
T |
|
| Q |
248 |
ttttctgca |
256 |
Q |
| |
|
|||| |||| |
|
|
| T |
4867332 |
ttttttgca |
4867340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 4814069 - 4814171
Alignment:
| Q |
135 |
tgataagcttattgctgcatcattagtaaaggtatttctctaaagtgatacataatttatgttgattttcttataagcataatgtgaatgcaagttcttg |
234 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||| || |||| | | |||||||| |||| ||| ||||| ||||||||| ||||| ||| |
|
|
| T |
4814069 |
tgataagcttattgcagcatcattagtaaaggtattgctctcaaatgatggacactttatgtttattt--ttaaaagcactatgtgaatgtaagttattg |
4814166 |
T |
|
| Q |
235 |
ggtgt |
239 |
Q |
| |
|
||||| |
|
|
| T |
4814167 |
ggtgt |
4814171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 454
Target Start/End: Original strand, 4867398 - 4867554
Alignment:
| Q |
298 |
ttttaagaatcattttcaggtcaaagtggcttgttttactttggatggcaaaaatggtagctcgagtaacctgaatttggggccttcttcaataccaata |
397 |
Q |
| |
|
||||||||||||||| ||||||| ||||| | ||||||| |||||||||||||| | || || ||||||||| | | ||||||||| | || | |
|
|
| T |
4867398 |
ttttaagaatcatttccaggtcatagtgggtagttttacattggatggcaaaaagaatggcctgaataacctgaaatatgaaccttcttcagcatcattg |
4867497 |
T |
|
| Q |
398 |
tcccaatttgctgcttttgggactccaactagtgctaccactcaaggtccttcatct |
454 |
Q |
| |
|
|||||| ||| ||||||||| |||||||| | ||| |||||||| || ||||||||| |
|
|
| T |
4867498 |
tcccaacttgttgcttttggaactccaaccaatgcgaccactcacgggccttcatct |
4867554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 7159076 - 7159144
Alignment:
| Q |
135 |
tgataagcttattgctgcatcattagtaaaggtatttctctaaagtgatacataatttatgttgatttt |
203 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||| || ||||| |||||| ||||||||||| |
|
|
| T |
7159076 |
tgataagcttattgcagcatcattggtaaaggtattgctcacaaatgatagataattcatgttgatttt |
7159144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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