View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_low_11 (Length: 456)
Name: NF13850_low_11
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 63 - 442
Target Start/End: Original strand, 45934582 - 45934959
Alignment:
| Q |
63 |
ctggacagattggaagcggtggatgggaaaccagggtggtattgttattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacacctg |
162 |
Q |
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| T |
45934582 |
ctggacagattggaagcggtggatgggaaaccagggtggtattggtattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacatctg |
45934681 |
T |
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| Q |
163 |
aaatactccaatgtccgagggaaaatacttgagattgttcttgcatgtcgtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatc |
262 |
Q |
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| T |
45934682 |
aaatactccaatgtccgagggaaaatacttgagattgtttttgcatgtcgtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatc |
45934781 |
T |
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| Q |
263 |
gtagcaaaaatattctggtacaacaactcgttttctttgctctacattaatttttgcaagttttaccccactgtctaactatc-tcaggnnnnnnnnatc |
361 |
Q |
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| T |
45934782 |
gtagcaaaaatattctggt---acaactcgttttctttgctctacattaatttttgcaagttttactccactgtctaactatcttcaggttttttttatc |
45934878 |
T |
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| Q |
362 |
gtaggtattcacactttcttgggcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgtatatgcaaaacc |
442 |
Q |
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| T |
45934879 |
gtaggtattcgcactttcttgggcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgtatatgcaaaacc |
45934959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 45934458 - 45934506
Alignment:
| Q |
14 |
atatcgaagctcgactcttaatttccttatcacaatctcaatgtggttt |
62 |
Q |
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| T |
45934458 |
atatcgaagctcgactcttaatttccttatcacaatctcaatgtggttt |
45934506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 70 - 431
Target Start/End: Original strand, 15816822 - 15817183
Alignment:
| Q |
70 |
gattggaagcggtggatgggaaaccagggtggtattgttattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacacctgaaatact |
169 |
Q |
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| T |
15816822 |
gattggaagcggtggatgggaaaccgtggtggtattggtattccatctgataaaagctgggaatcttggtgggatgaagaaaatgaacacctgaaatact |
15816921 |
T |
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| Q |
170 |
ccaatgtccgagggaaaatacttgagattgttcttgcatgtcgtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatcgtagcaa |
269 |
Q |
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| T |
15816922 |
ccaatgtccgagggaaaatacttgagattgttcttgcatgccgcttctttatctaccaatatggaattgtctaccacctgaatattgcgcgtcgtagcaa |
15817021 |
T |
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| Q |
270 |
aaatattctggtacaacaactcgttttctttgctctacattaatttttgcaagttttaccccactgtctaactatctcaggnnnnnnnnatcgtaggtat |
369 |
Q |
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||||||||||||||||||||| |||||||||| ||||| ||||||||||||| ||||||||| | ||||||||| || || ||| ||||||| |
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| T |
15817022 |
aaatattctggtacaacaacttgttttctttgttctaccttaatttttgcaaattttacccctccgtctaactacctttggtttttcttatcataggtat |
15817121 |
T |
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| Q |
370 |
tcacactttcttgggcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgta |
431 |
Q |
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|| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15817122 |
tcgcactttcttgggtagttttggttatagtccttatcgtcttaaaggtatgtacttttgta |
15817183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 15816696 - 15816740
Alignment:
| Q |
18 |
cgaagctcgactcttaatttccttatcacaatctcaatgtggttt |
62 |
Q |
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| T |
15816696 |
cgaagctcaactctttatttcttcatcacaatctcaatgtggttt |
15816740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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