View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13850_low_12 (Length: 452)

Name: NF13850_low_12
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13850_low_12
NF13850_low_12
[»] chr6 (11 HSPs)
chr6 (17-452)||(1309054-1309488)
chr6 (167-450)||(26710701-26710984)
chr6 (167-452)||(16466887-16467172)
chr6 (167-452)||(33146855-33147140)
chr6 (167-446)||(31933719-31933997)
chr6 (167-446)||(3490233-3490521)
chr6 (282-365)||(33754645-33754728)
chr6 (282-365)||(17714069-17714152)
chr6 (282-365)||(24991498-24991580)
chr6 (281-365)||(19617298-19617382)
chr6 (289-332)||(26444138-26444181)
[»] chr8 (8 HSPs)
chr8 (167-449)||(43598957-43599239)
chr8 (167-452)||(13403553-13403835)
chr8 (167-445)||(24732609-24732886)
chr8 (167-448)||(41692151-41692437)
chr8 (273-365)||(38891839-38891931)
chr8 (286-365)||(12230333-12230412)
chr8 (328-365)||(36780667-36780704)
chr8 (313-361)||(15045898-15045946)
[»] chr2 (20 HSPs)
chr2 (167-452)||(79243-79528)
chr2 (167-452)||(44939698-44939983)
chr2 (167-452)||(3153625-3153917)
chr2 (167-452)||(10059803-10060095)
chr2 (167-354)||(6432593-6432786)
chr2 (167-367)||(1222433-1222638)
chr2 (279-365)||(34385381-34385467)
chr2 (289-365)||(6469058-6469134)
chr2 (285-365)||(14163979-14164059)
chr2 (167-245)||(32417452-32417530)
chr2 (289-365)||(536308-536384)
chr2 (279-389)||(39768585-39768695)
chr2 (167-231)||(1398187-1398251)
chr2 (295-359)||(32598788-32598852)
chr2 (282-365)||(23289924-23290007)
chr2 (311-361)||(16203029-16203079)
chr2 (273-353)||(23390543-23390623)
chr2 (287-362)||(34358801-34358876)
chr2 (311-353)||(29870720-29870762)
chr2 (302-366)||(17930698-17930762)
[»] chr3 (21 HSPs)
chr3 (167-452)||(16896962-16897248)
chr3 (167-452)||(31644398-31644683)
chr3 (167-452)||(30937046-30937336)
chr3 (167-449)||(50543045-50543324)
chr3 (308-452)||(19232695-19232839)
chr3 (195-449)||(11583554-11583812)
chr3 (167-310)||(19229756-19229899)
chr3 (167-452)||(40969683-40969967)
chr3 (167-395)||(53050427-53050654)
chr3 (283-365)||(15372355-15372437)
chr3 (289-365)||(19653231-19653307)
chr3 (282-365)||(25617563-25617646)
chr3 (282-365)||(33980601-33980683)
chr3 (281-374)||(7922376-7922469)
chr3 (289-365)||(50029039-50029115)
chr3 (282-365)||(37166291-37166374)
chr3 (273-365)||(37835777-37835869)
chr3 (282-365)||(26376655-26376738)
chr3 (312-361)||(30819250-30819299)
chr3 (167-226)||(41303360-41303419)
chr3 (327-365)||(27874336-27874374)
[»] chr4 (21 HSPs)
chr4 (167-452)||(38948264-38948549)
chr4 (167-452)||(53679500-53679785)
chr4 (167-422)||(19836604-19836858)
chr4 (167-446)||(19309980-19310264)
chr4 (167-452)||(43470192-43470477)
chr4 (279-452)||(8933117-8933290)
chr4 (273-365)||(26017669-26017761)
chr4 (282-365)||(10009663-10009746)
chr4 (273-365)||(7446334-7446426)
chr4 (281-361)||(32045521-32045601)
chr4 (279-366)||(14528328-14528415)
chr4 (287-366)||(25459497-25459576)
chr4 (282-365)||(38654697-38654775)
chr4 (316-366)||(36188698-36188748)
chr4 (273-366)||(2398395-2398488)
chr4 (311-387)||(5592314-5592390)
chr4 (311-387)||(48125980-48126056)
chr4 (311-361)||(42766208-42766258)
chr4 (313-361)||(20248770-20248818)
chr4 (313-365)||(21479267-21479319)
chr4 (311-359)||(42674945-42674993)
[»] chr7 (13 HSPs)
chr7 (167-452)||(34205791-34206083)
chr7 (167-452)||(4163500-4163792)
chr7 (167-452)||(43109291-43109583)
chr7 (167-452)||(45458902-45459185)
chr7 (167-452)||(39295760-39296045)
chr7 (303-365)||(5651939-5652001)
chr7 (289-365)||(21431401-21431477)
chr7 (282-365)||(32703038-32703121)
chr7 (281-365)||(18014897-18014982)
chr7 (288-365)||(8606909-8606986)
chr7 (295-359)||(8567621-8567685)
chr7 (167-235)||(39297679-39297747)
chr7 (167-235)||(46641089-46641157)
[»] chr1 (17 HSPs)
chr1 (167-452)||(10386300-10386592)
chr1 (167-395)||(6333075-6333302)
chr1 (277-452)||(51169660-51169834)
chr1 (282-365)||(31458838-31458921)
chr1 (282-365)||(35368405-35368488)
chr1 (282-365)||(36193272-36193355)
chr1 (282-365)||(32641454-32641537)
chr1 (289-365)||(24561548-24561624)
chr1 (282-365)||(51128502-51128585)
chr1 (287-363)||(22560261-22560337)
chr1 (286-361)||(38029786-38029861)
chr1 (313-366)||(22816568-22816621)
chr1 (167-220)||(51169552-51169605)
chr1 (311-354)||(18606151-18606194)
chr1 (312-367)||(39415808-39415863)
chr1 (167-212)||(22174736-22174781)
chr1 (313-361)||(20417613-20417661)
[»] chr5 (13 HSPs)
chr5 (167-443)||(3417435-3417711)
chr5 (167-325)||(41611041-41611206)
chr5 (167-423)||(841447-841708)
chr5 (167-378)||(2680604-2680816)
chr5 (272-365)||(28639230-28639323)
chr5 (282-365)||(10468809-10468892)
chr5 (282-365)||(26501413-26501497)
chr5 (279-389)||(42495283-42495390)
chr5 (273-365)||(16422154-16422246)
chr5 (313-361)||(33023571-33023619)
chr5 (313-365)||(40526010-40526063)
chr5 (313-365)||(38707185-38707237)
chr5 (312-353)||(27017487-27017528)
[»] scaffold0217 (1 HSPs)
scaffold0217 (282-402)||(8235-8355)
[»] scaffold0394 (1 HSPs)
scaffold0394 (279-365)||(5261-5347)
[»] scaffold0649 (1 HSPs)
scaffold0649 (167-262)||(7721-7815)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 1309488 - 1309054
Alignment:
Q  17 attactctctctactctgaactatcatttctctcccaacgcaaataacatgtaggcggaaatctgatgtggagattatgcttgtagtccttgacgtattc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1309488 attactctctctactctgaactatcatttctctcccaacgcaa-taacatgtaggcggaaatctgatgtggagattatgcttgtagtccttgacgtattc 1309390  T
Q  117 tttgagtgaagagctcgacggaagtataaannnnnnnnnnnnaacaagccaa--tgagatatattaacaaagaattttgttccctagcataaggagtgtc 214  Q
    |||||||||| ||||||||||||||||||             ||||||||||  ||||||||||||||||||| ||||||||||||||| |||||||| |    
T  1309389 tttgagtgaaaagctcgacggaagtataa--tttttttttttaacaagccaaaatgagatatattaacaaagagttttgttccctagcacaaggagtgcc 1309292  T
Q  215 aaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagatatgaacgaataatacatcagccaatccctaaacaagcaaggggacgctg 314  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||    
T  1309291 aaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaaaagatatggacgaataatacatcagccaatccttaaacaagcaagggggcgctg 1309192  T
Q  315 ccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgtttta 414  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1309191 tcaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgtttta 1309092  T
Q  415 gctgtgttgacaaacaatctattatttctttcattcca 452  Q
    | |||||||||||| |||||||||||||||||||||||    
T  1309091 gttgtgttgacaaataatctattatttctttcattcca 1309054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 167 - 450
Target Start/End: Original strand, 26710701 - 26710984
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  26710701 aatgagatatattaacaaagagttttgttccttagcacaaggagtgtcaaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaaaagaca 26710800  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26710801 tgaacgataaatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaagcacacattttttgctttcaaccat 26710900  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattc 450  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  26710901 ttgagagatgtaatcttaacattctcaagaagttgctctgttgttttagctgtgttgacaaacatttttttatttctttcattc 26710984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 16466887 - 16467172
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||| |    
T  16466887 aatgagatatattaataaagagttttgttccctagcacaaggagtgccaaaggagacaaaacaaggttacaaaatagttccaattaaaccacaaaagaca 16466986  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  16466987 tgaacgaaaaatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataatcaaaaggaaagcacacattttttgttttcaaccat 16467086  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  16467087 ttgagagatgtaatcttaaccttctcaagaagttgctcttttgttttagctgtgttgacaaacagtcttttatttctttcattcca 16467172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 33147140 - 33146855
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||| ||||| |||||||||||| || ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |    
T  33147140 aatgagatatattaataaagagttttgttccctaacacaaggagtgttaaaggagacaaaacaaggttacaagatagttccaatcaaaccacaaaagaca 33147041  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| ||||||||||    
T  33147040 tgaacgaaaaatacatcagtcaatctctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaagcacgtattttttgatttcaaccat 33146941  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  33146940 ttgagagatgtaatcttaaccttctcaagaagttgatctgttgttttagctgtgttgataaacagtcttttatttctttcattcca 33146855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 167 - 446
Target Start/End: Original strand, 31933719 - 31933997
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||| |||| ||||||||||||  ||| |||  |||||| |||||||||||||| |||    
T  31933719 aatgagatatattaacaaaaagttttgatccctagcataaggagtgccaaaagagacaaaacaaaattacaaag-agttccgatcaaaccacaaaaaata 31933817  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
      || ||| |||||||||| ||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  31933818 acaaggaaaaatacatcagtcaatccccaaacaagtaaggggacgctgccaccacatatggtaaccaaaaggaaagcacacattttttgctttcaaccat 31933917  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttc 446  Q
    || |||||| ||||||||||||||||||| | |||  | |||||||| ||||| |||||||| | ||| | |||||||||    
T  31933918 ttaagagatataatcttaaccttctcaagtaattgtgcagttgtttttgctgtattgacaaatattctctgatttctttc 31933997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 167 - 446
Target Start/End: Complemental strand, 3490521 - 3490233
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||| | ||||| ||||||||| |||||||||| ||  |||||||||||  ||| |||  |||||| |||||||||||||| |||    
T  3490521 aatgagatatattaacaaaaagttttgatccctagcacaaggagtgtctaaaaagacaaaacaaaattacaaag-agttccgatcaaaccacaaaaaata 3490423  T
Q  267 tgaacgaataa----------tacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgc 356  Q
      || ||||||          |||||||| ||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  3490422 acaaggaataaaaaggaaaaatacatcagtcaatccccaaacaagtaaggggacgctgccaccacatatggtaaccaaaaggaaagcacacattttttgc 3490323  T
Q  357 tttcaaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttc 446  Q
    |||||||||||| |||||| ||||||||||||||||||| | |||  | |||||||| ||||| |||||||| | ||| | |||||||||    
T  3490322 tttcaaccatttaagagatataatcttaaccttctcaagtaattgtgcagttgtttttgctgtattgacaaatattctctgatttctttc 3490233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 33754728 - 33754645
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||||||||||||   |||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  33754728 tcagcctatccctaaacaagcaaggggattttgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 33754645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 17714152 - 17714069
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||| ||||||| | |||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  17714152 tcagcctatccttaaacaatctaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 17714069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 24991580 - 24991498
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| |||||||| |||||||||| ||||||||| ||||| | || ||||||||||| |||||||||||    
T  24991580 tcagcctatccctaaacaaacaaggggatgctgccaccataaatgataatcaaaaag-aagcacacatttttagctttcaacca 24991498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 365
Target Start/End: Complemental strand, 19617382 - 19617298
Alignment:
Q  281 atcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||||||||||| |||||| |||||||  |||||||||||| |||  ||||||||| ||| ||  |||| || |||||||||||    
T  19617382 atcagccaatccccaaacaaacaaggggttgctgccaccacatatgtgaaccaaaagaaaagcaagcattcttagctttcaacca 19617298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 26444181 - 26444138
Alignment:
Q  289 atccctaaacaagcaaggggacgctgccaccacaaatgataacc 332  Q
    |||||||||||| |||||||| |||||||||| |||||||||||    
T  26444181 atccctaaacaaacaaggggatgctgccaccataaatgataacc 26444138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 167 - 449
Target Start/End: Original strand, 43598957 - 43599239
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  43598957 aatgagatatattaacaaagagttttgttccctagcataaggagtgtcaaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaaaagaca 43599056  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43599057 tgaacgaataatacatcaaccaatccctaaacaagcaaggggacgctgccaccacaaatgataactaaaaggaaaacacacattttttgctttcaaccat 43599156  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcatt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  43599157 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttggcaaacaatctattatttatttcatt 43599239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 13403553 - 13403835
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  13403553 aatgagatatattaacaaagagttttgttccctagcacaaggagtgccaaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaaaagaca 13403652  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||   ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  13403653 tgaacgaaaaatacatcagtcaatccctaaacaagcaaggggacgctg---ccacaaatgataatcaaaaggaaagcacacattttttgctttcaaccat 13403749  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  13403750 ttgagagatgtaatcttaaccttctcaagaagttgctatgttgttttagctgtgttgacaaacagtcttttatttctttcattcca 13403835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 167 - 445
Target Start/End: Original strand, 24732609 - 24732886
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||||  ||| |||  |||||| |||||||||||||| |||    
T  24732609 aatgagatatattaacaaaaagttttgatccctagcacaaggagtgtcaaaagagacaaaacaaaattacaaag-agttccgatcaaaccacaaaaaata 24732707  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
      || ||| |||||||||||||||| | |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  24732708 acaaggaaaaatacatcagccaatctccaaacaagcaaggggacgctgccaccacatatggtaaccaaaaggaaagcacacattttttgctttcaaccat 24732807  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttcttt 445  Q
    || |||||| ||||||||||||||||||| | |||  | |||||||| ||||| |||||||| | ||| | ||||||||    
T  24732808 ttaagagatataatcttaaccttctcaagtaattgtgcagttgtttttgctgtattgacaaatattctctgatttcttt 24732886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 167 - 448
Target Start/End: Complemental strand, 41692437 - 41692151
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaa---- 262  Q
    ||||||||||||||||| | | ||||| ||||||||| ||| |||| |||||||  | || |||| ||| |||| |||||||| ||||||||||||        
T  41692437 aatgagatatattaacacaaagttttgatccctagcacaagaagtgccaaaggaatcgaagcaagattacaaaa-agttccaaccaaaccacaaaaacaa 41692339  T
Q  263 -gatatgaacgaataat-acatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttc 360  Q
     ||   ||| ||| ||| ||||||||||||||| |||||  ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||    
T  41692338 cgagcagaaggaaaaattacatcagccaatccccaaacagtcaaggggacgctgccaccacatatgataaccataaggaaagcacacattttttgctttc 41692239  T
Q  361 aaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcat 448  Q
    |||||||| |||||| ||||||||||||||||||| | |||    |||||||| | ||| |||||||| | ||| | |||||||||||    
T  41692238 aaccatttaagagatataatcttaaccttctcaagtaattgtgtagttgtttttgttgtattgacaaatagtctctgatttctttcat 41692151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 38891931 - 38891839
Alignment:
Q  273 aataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||| || |||||| |||||||||||| |||||||| ||||| |||| ||||||||||||| |||||| ||||||||||| |||||||||||    
T  38891931 aataaaacttcagcctatccctaaacaaacaaggggatgctgctaccataaatgataaccaagaggaaagcacacatttttagctttcaacca 38891839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 365
Target Start/End: Original strand, 12230333 - 12230412
Alignment:
Q  286 ccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||  |||||| ||||| |  |||||||||||| ||| |||||||||||||| || |||||||| |||||||||||    
T  12230333 ccaatcctcaaacaaacaaggagttgctgccaccacatatggtaaccaaaaggaaagcaaacatttttcgctttcaacca 12230412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Original strand, 36780667 - 36780704
Alignment:
Q  328 taaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  36780667 taaccaaaagaaaaacacacatttttagctttcaacca 36780704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 15045946 - 15045898
Alignment:
Q  313 tgccaccacaaatgataaccaaaaggaaaacacacattttttgctttca 361  Q
    |||||||||||||| |||| |||||||||||| |||| ||| |||||||    
T  15045946 tgccaccacaaatggtaactaaaaggaaaacaaacatgtttagctttca 15045898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 79243 - 79528
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |    
T  79243 aatgagatatattaacaaagagttttgttccctagcacaaggagtgtcaaaggagacaaaacgaggttacaaaatagttccaatcaaaccacaaaagaca 79342  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  79343 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaagcacacattttttgcttttaaccat 79442  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  79443 ttgagagatgtaatcttaaccttctcaagaagttgttctgttgttttagttgtgttgacaaacaatctattatttctttcattcca 79528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 44939698 - 44939983
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  44939698 aatgagatatattaacaaagagttttgttccctagcataaggagtgccaaaggagacaaaataaggttacaaaatagttccaatcaaaccacaaaagaca 44939797  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  44939798 tgaacgaataatacatcagccaatccctaaaccagcaaggggatgctgccaccacaaatgataatcaaaaggaaagcacacattttttgctttcaaccat 44939897  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  44939898 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctataatttcttttattcca 44939983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 3153917 - 3153625
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3153917 aatgagatatattaacaaagagttttgttccctagcacaaggagtgccaaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaaaagata 3153818  T
Q  267 tgaacgaataatacatca-------gccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
    |||||||| |||||||||       | |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  3153817 tgaacgaaaaatacatcatacatcagtcaatccctaaacaaacaaggggacgctgccaccataaatgataaccaaaaggaaagcacacattttttgcttt 3153718  T
Q  360 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3153717 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 3153625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 10059803 - 10060095
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  10059803 aatgagatatattaataaagagttttgttccctagcacaaggagtgccaaaggagacaaaacaaagttacaaaatagttccaatcaaaccacaaaagata 10059902  T
Q  267 tgaacgaataatac-------atcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
    |||||||| |||||       |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  10059903 tgaacgaaaaatacatcatacatcagccaatccctaaacaagcaaggggacgctgccgccataaatgataaccaaaaggaaagcacacattttttgcttt 10060002  T
Q  360 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10060003 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgtattagctgtgttgacaaacaatctattatttctttcattcca 10060095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 167 - 354
Target Start/End: Original strand, 6432593 - 6432786
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |    
T  6432593 aatgagatatattaacaaagagttttgttccctagcacaagaagtgtcaaaggagacaaaacaaggttacaaaatagttccaatcaaaccac-aaagaca 6432691  T
Q  267 tgaacga-------ataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacatttttt 354  Q
    |||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6432692 tgaacgaaaaatacatcatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaagcacacatttttt 6432786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 167 - 367
Target Start/End: Original strand, 1222433 - 1222638
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaaga-- 264  Q
    |||||||||||||||||||   ||||| ||||||||| |||||||| |||| ||||||||||||  ||| |||| |||||| | |||||||||||| |      
T  1222433 aatgagatatattaacaaaacgttttgatccctagcacaaggagtgccaaaagagacaaaacaaaattacaaaa-agttccgaacaaaccacaaaaaaga 1222531  T
Q  265 -----tatgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
         ||  || ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||| ||||    
T  1222532 gaaaataccaaggaa-aatacatcagccaatccccaaacaagtaaggggacgctgccaccacatatggtaaccaaaagaaaaacacacattttttacttt 1222630  T
Q  360 caaccatt 367  Q
    ||||||||    
T  1222631 caaccatt 1222638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 34385381 - 34385467
Alignment:
Q  279 acatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||||| |||||||||||||| |||||||| |||||||||| ||||  ||||||||||||||||||||||||||  ||||||||||    
T  34385381 acatcagtcaatccctaaacaaacaaggggatgctgccaccataaatagtaaccaaaaggaaaacacacatttttatctttcaacca 34385467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 6469058 - 6469134
Alignment:
Q  289 atccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||||||| || |||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  6469058 atccctaaataaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 6469134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 365
Target Start/End: Original strand, 14163979 - 14164059
Alignment:
Q  285 gccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||||||| ||||| |||||||||  ||||||||||| |||||||||||| ||||| |||||||||||||||||||||||    
T  14163979 gccaatccccaaacatgcaaggggattctgccaccacatatgataaccaaagggaaagcacacattttttgctttcaacca 14164059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 32417452 - 32417530
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagtt 245  Q
    ||||||||||||||||| ||| ||||||| ||||||| |||||||| |||| ||||||||||||||||| |||||||||    
T  32417452 aatgagatatattaacagagagttttgtttcctagcacaaggagtgccaaatgagacaaaacaaggttacaaaatagtt 32417530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 536384 - 536308
Alignment:
Q  289 atccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||||||| |||||||| |||||||||| |||||||| ||||||||||| |||||||| || |||||||||||    
T  536384 atccctaaacaaacaaggggatgctgccaccataaatgatagccaaaaggaaatcacacattattagctttcaacca 536308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 389
Target Start/End: Complemental strand, 39768695 - 39768585
Alignment:
Q  279 acatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatgta 378  Q
    ||||||| ||||||| |||||  |||| ||| |||||||||||| |||||||| ||||||||| || |||||||| |||||||| ||    | |||||||    
T  39768695 acatcagtcaatccccaaacagacaagaggatgctgccaccacatatgataactaaaaggaaagcaaacatttttagctttcaatcaccgaaaagatgta 39768596  T
Q  379 atcttaacctt 389  Q
    |||||||||||    
T  39768595 atcttaacctt 39768585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 1398251 - 1398187
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaag 231  Q
    |||||||||||||||||||   ||||| ||||||||| |||||||| ||||||| ||||||||||    
T  1398251 aatgagatatattaacaaaatgttttggtccctagcacaaggagtgccaaaggaaacaaaacaag 1398187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 32598788 - 32598852
Alignment:
Q  295 aaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||   || |||||||||||    
T  32598788 aaacaagtaaggggttgctgccaccacaaatgataaccaaaaggaaaaacaactttttttgcttt 32598852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 23289924 - 23290007
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||||||| |||||| |||||||  | ||||||||||  || |||||||||||||| || ||||| || |||||||||||    
T  23289924 tcagccaatccccaaacaaacaaggggttgttgccaccacatgtggtaaccaaaaggaaatcaaacattcttagctttcaacca 23290007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 16203079 - 16203029
Alignment:
Q  311 gctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttca 361  Q
    |||| ||||||| ||||||||||||||||||||| |||||||| |||||||    
T  16203079 gctgtcaccacatatgataaccaaaaggaaaacatacatttttagctttca 16203029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 23390623 - 23390543
Alignment:
Q  273 aataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttt 353  Q
    ||||| ||||||| | ||||| |||||  |||||||| |||||||||| |||| ||||||||| || || |||||||||||    
T  23390623 aataaaacatcagtctatccccaaacagacaaggggatgctgccaccataaataataaccaaatggcaatcacacattttt 23390543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 34358801 - 34358876
Alignment:
Q  287 caatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaa 362  Q
    ||||||| ||||||  ||||||  | |||||||||| |||||||||||||||||| |  |||||||| ||||||||    
T  34358801 caatccccaaacaaaaaaggggttgatgccaccacatatgataaccaaaaggaaagcttacatttttagctttcaa 34358876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 29870720 - 29870762
Alignment:
Q  311 gctgccaccacaaatgataaccaaaaggaaaacacacattttt 353  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||    
T  29870720 gctgccaccacatatgataaccaaaacgaaaacaaacattttt 29870762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 17930698 - 17930762
Alignment:
Q  302 caaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    |||||||  |||||||||||| | | |||||||| ||||| || |||||||| ||||||||||||    
T  17930698 caaggggttgctgccaccacataaggtaaccaaagggaaagcaaacatttttagctttcaaccat 17930762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 16897248 - 16896962
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  16897248 aatgagatatattaacaaagagttttgttccctaacacaaggagtgccaaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaaaagaca 16897149  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacatt-ttttgctttcaacca 365  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  16897148 tgaacgaataatacatcagtcaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaagcacacatttttttgctttcaacca 16897049  T
Q  366 tttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  16897048 tttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgctgataaacaatctattatttctttcattcca 16896962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 31644398 - 31644683
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  31644398 aatgagatatattaacaaagagttttgtttcctagcacaaggagcgccaaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaaaagaca 31644497  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31644498 tgaacgaaaaatacatcagctaatccctaaacaaacaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttactttcaaccat 31644597  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  31644598 ttgagagatgtaatcttaaccttctcaagaagttgctatgttgttttagctgtgttgacaaacagtcttttatttctttcattcca 31644683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 30937336 - 30937046
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    |||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||| |||||| |    
T  30937336 aatgagatatattaacaa-gagttttgttccctagcataaggagtgccaaatgagacaaaacaaggttacaaa-tagttccaatcaaaccataaaagaca 30937239  T
Q  267 tgaacgaataatacatcagcca-------atccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
    |||||||| |||||||||  ||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  30937238 tgaacgaaaaatacatcatacatcactcaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaagaaaatcacacattttttgcttt 30937139  T
Q  360 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30937138 caaccatttgagagatgtaatcttaaccttctcaagaagttgctatgttgttttagctgtgttgacaaacaatctattatttctttcattcca 30937046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 167 - 449
Target Start/End: Complemental strand, 50543324 - 50543045
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||| ||||| ||  ||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  50543324 aatgagatataataacagag--ttttgttccctagcacaaggagtgctaaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaaaagaca 50543227  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    | ||| || |||||||||| |||||||||||||||||| | |||||||||||||||||||||||  ||||| ||| |||| |||||||||||||||||||    
T  50543226 tcaacaaa-aatacatcagtcaatccctaaacaagcaatgagacgctgccaccacaaatgataataaaaagaaaagcacatattttttgctttcaaccat 50543128  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcatt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50543127 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatcttttatttctttcatt 50543045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 308 - 452
Target Start/End: Original strand, 19232695 - 19232839
Alignment:
Q  308 gacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatgtaatcttaaccttctcaagaagttgctctgt 407  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19232695 gacgctgccaccacaaatgatatccaaaaggaaagcacacattttttgctttcaaccatttgagagatgtaatcttaaccttctcaagaagttgctctgt 19232794  T
Q  408 tgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  19232795 tgttttagctgtgttgacaaacaatcttttatttctttcattcca 19232839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 195 - 449
Target Start/End: Original strand, 11583554 - 11583812
Alignment:
Q  195 tccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaa-ccacaaaagatatgaacgaataa---tacatcagccaat 290  Q
    ||||||||| ||||||||  |||||| |||||||||||||| |||| |||||  |||||| |||||||||| |  ||  || ||   || |||| |||||    
T  11583554 tccctagcacaaggagtgctaaaggaaacaaaacaaggttacaaaagagttctgatcaaaaccacaaaagacagcaagaaaaaaatataaatcaaccaat 11583653  T
Q  291 ccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatgtaatcttaaccttc 390  Q
    ||| |||||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11583654 cccgaaacaagcaaggagacgctgccaccacatatggtaaccaaatggaaaacacacattttttgctttcaacaatttgagagatgtaatcttaaccttc 11583753  T
Q  391 tcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcatt 449  Q
    ||||| | ||||||||||||| | ||||||||| |||||||||| |  |||||||||||    
T  11583754 tcaagtaattgctctgttgttcttgctgtgttggcaaacaatctttggtttctttcatt 11583812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 19229756 - 19229899
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| |    
T  19229756 aatgagatatattaacaaagagttttgttccctagcacaaggagtgccaaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaatagaca 19229855  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggac 310  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  19229856 tgaacgaaaaatacatcagccaatccctaaacaaggaaggggac 19229899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 40969683 - 40969967
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||| | |||||| |||||||| ||| |||| ||||| | ||||||||| |||| || | |||| | |||||| || |||||  |    
T  40969683 aatgagatatattaacaaa-agttttgtaccctagcacaagaagtgccaaagaaaacaaaacaaagttacaacaaagtttcgatcaaagcaaaaaaggaa 40969781  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
       |  || | || ||||||||||||| |||||||||| |||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||||     
T  40969782 aataaaaagagtaaatcagccaatccccaaacaagcaaagggacgttgccaccacatatgataaccaaatggaaagcacacattttttgctttcaaccac 40969881  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||| | |||| |||||||| | ||||||||   ||||| ||| | |||||||||||||||    
T  40969882 ttgagagatgtaatcttaaccttctcaagtaattgcactgttgttcttgctgtgttagtaaacagtctttgatttctttcattcca 40969967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 395
Target Start/End: Original strand, 53050427 - 53050654
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||| | |||||| |||||||| ||| |||| ||||| | ||||||||| |||| || | |||||| |||||| || |||||  |    
T  53050427 aatgagatatattaacaaa-agttttgtaccctagcacaagaagtgccaaagaaaacaaaacaaagttacaacaaagttccgatcaaagcaaaaaaggaa 53050525  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
       |  || |  | ||||||||||||| |||||||||| |||| | |||||||| | |||||||||||| | ||||||||||||||||||||||||||||    
T  53050526 aataaaaagagcaaatcagccaatccccaaacaagcaaagggatgttgccaccatatatgataaccaaatgaaaaacacacattttttgctttcaaccat 53050625  T
Q  367 ttgagagatgtaatcttaaccttctcaag 395  Q
    |||||||||||||||||||| ||||||||    
T  53050626 ttgagagatgtaatcttaacattctcaag 53050654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 365
Target Start/End: Complemental strand, 15372437 - 15372355
Alignment:
Q  283 cagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||| |||||||||||| ||| |||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  15372437 cagcctatccctaaacaaacaaagggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 15372355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 19653307 - 19653231
Alignment:
Q  289 atccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||||||||||||||||   |||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  19653307 atccctaaacaagcaaggggattttgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 19653231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 25617646 - 25617563
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| ||| |||| |||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||    
T  25617646 tcagcctatccctaaacaaacaaagggatgctgccaccataaatgataaccaaaagaaaagcacacatttttagctttcaacca 25617563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 33980601 - 33980683
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| |||||||| |||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||    
T  33980601 tcagcctatccctaaacaaacaaggggatgctgccaccataaatgataa-caaaaggaaagcacacatttttagctttcaacca 33980683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 374
Target Start/End: Complemental strand, 7922469 - 7922376
Alignment:
Q  281 atcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagaga 374  Q
    ||||||||||||| |||||  |||||||| | |||||||| |||||||||||||||||||| ||||||||||| | ||| ||||| | ||||||    
T  7922469 atcagccaatccccaaacagacaaggggatgttgccaccataaatgataaccaaaaggaaagcacacatttttagtttttaaccagtcgagaga 7922376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 50029039 - 50029115
Alignment:
Q  289 atccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||||||||||||||| |||   |||||||| |||||||||||||||||||| |||||||||||  ||||||||||    
T  50029039 atccctaaacaagcaagaggattttgccaccataaatgataaccaaaaggaaagcacacatttttaactttcaacca 50029115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 37166374 - 37166291
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||| ||||||| |||||| |||||||  |||||||||||| ||| |||||||||||||||||||| ||||| | |||||||||    
T  37166374 tcagtcaatccccaaacaaacaaggggttgctgccaccacatatggtaaccaaaaggaaaacacacgtttttagttttcaacca 37166291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 37835869 - 37835777
Alignment:
Q  273 aataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||| ||||||| ||||| | |||||| |||||||| | |||||||||| ||||| ||||||| ||||||| | |||||| |||||||||||    
T  37835869 aataaaacatcagtcaatctccaaacaaacaaggggatgttgccaccacatatgatgaccaaaaagaaaacatatatttttagctttcaacca 37835777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 26376738 - 26376655
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||||||| |||||| |||||||  | |||||||||| ||| |||||||||||||| || ||||| || |||||||||||    
T  26376738 tcagccaatccccaaacaaacaaggggttgttgccaccacatatggtaaccaaaaggaaagcaaacattcttagctttcaacca 26376655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 30819250 - 30819299
Alignment:
Q  312 ctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttca 361  Q
    |||||| |||| ||||||||||||||||||||| |||||||||| |||||    
T  30819250 ctgccaacacatatgataaccaaaaggaaaacaaacattttttgttttca 30819299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 41303419 - 41303360
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaa 226  Q
    ||||||||| | ||||||| | ||||| |||||||||||||||||| ||||||| |||||    
T  41303419 aatgagataaaataacaaaaagttttgatccctagcataaggagtgccaaaggaaacaaa 41303360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 27874336 - 27874374
Alignment:
Q  327 ataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  27874336 ataaccaaaaggaaagcacacatttttagctttcaacca 27874374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 38948549 - 38948264
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    |||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  38948549 aatgagatatattaacaacgagttttgttccctagcataaggagtgccaaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaaaagaca 38948450  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    | ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  38948449 taaacgaataatacatcagtcaattcctaaacaagcaaggggatgctgccaccacaaatgataaccaaaaggaaagcacacattttttgctttcaacaat 38948350  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38948349 ttgagagatgtaatcttaaccttctcaagaagttgctatgttgttttagctgtgttgacaaacaatctattatttctttcattcca 38948264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 53679785 - 53679500
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||| ||  ||||| ||||||||||||||  ||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  53679785 aatgagatataatagtaaagagttttgttccctagcgcaaggagtgctaaaggagacaaaataaggttacaaaatagttccaatcaaaccacaaaagaca 53679686  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    | ||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||||    
T  53679685 tcaacaaaaaatacatcagccaatccctaaacaagcaagtggacgctgccaccacaaatgatatccaaaagaaaagcatacattttttgctttcaaccat 53679586  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  53679585 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagttgtgttgacaaacaatcttttatttctttcattcca 53679500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 167 - 422
Target Start/End: Original strand, 19836604 - 19836858
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||| | |||||| |||||||| ||| |||| ||||||| ||||||||| |||| || | |||||| |||||| || |||||  |    
T  19836604 aatgagatatattaacaaa-agttttgtaccctagcacaagaagtgccaaaggaaacaaaacaaagttacaataaagttccgatcaaagcaaaaaaggaa 19836702  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
       |  || |  | ||||||||||||| |||||||||| |||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||||     
T  19836703 aataaaaagagcaaatcagccaatccccaaacaagcaaagggacgttgccaccacatatgataaccaaatggaaagcacacattttttgctttcaaccac 19836802  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgtt 422  Q
    |||||||||||||||||||| |||||||| | |||| |||||||| | ||||||||    
T  19836803 ttgagagatgtaatcttaacattctcaagtaattgcactgttgttcttgctgtgtt 19836858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 167 - 446
Target Start/End: Complemental strand, 19310264 - 19309980
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    |||||||||||||||||||   ||||| ||||||||| |||||||| |||| ||||||||||||  ||| |||  |||||| | |||||||||||| | |    
T  19310264 aatgagatatattaacaaaacgttttgatccctagcacaaggagtgccaaaagagacaaaacaaaattacaaag-agttccgaacaaaccacaaaaaaga 19310166  T
Q  267 tgaacga------ataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttc 360  Q
      || ||      | ||||||| |||||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||    
T  19310165 gaaaagaccaaggaaaatacattagccaatccccaaacaagtaaggggacgctgccaccacacatggtaaccaaaaggaaagcacacattttttgctttc 19310066  T
Q  361 aaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttc 446  Q
    |||||||  |||||| | ||||||||||||||||| | |||  | |||||||| ||||| |||||||| ||||| | |||||||||    
T  19310065 aaccattgaagagatatgatcttaaccttctcaagtaattgtgcagttgtttttgctgtattgacaaataatctctgatttctttc 19309980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 43470477 - 43470192
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||| | ||||| |||||| || ||| ||||  |||||| |||||||||  ||| ||| |||||||||||||||||||||||| |    
T  43470477 aatgagatatattaacaaaaagttttgatccctaacacaagtagtgctaaaggaaacaaaacaaaattacaaa-tagttccaatcaaaccacaaaagaca 43470379  T
Q  267 tgaacgaataat-acatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
      || ||| ||| ||||||  ||||||| ||| ||| |||| |||||| |||||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  43470378 acaaagaaaaattacatcaatcaatccccaaataagtaaggagacgctaccaccacatatggtaaccaaaaggaaagcacacattttttgctttcaacca 43470279  T
Q  366 tttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||| ||||| |||||| |||| |||||||| | |||  |  ||||||| ||||| |||||||| ||||| | ||||||||| |||||    
T  43470278 tttaagagaagtaatcataactttctcaagtaattgtgcaattgtttttgctgtattgacaaataatctttgatttctttcgttcca 43470192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 279 - 452
Target Start/End: Complemental strand, 8933290 - 8933117
Alignment:
Q  279 acatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatgta 378  Q
    |||||| |||||||| ||||||  ||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||| | ||||  ||| ||||||    
T  8933290 acatcaaccaatccccaaacaaataaggggatgctgccaccacatatgataaccaaaaggaaagcacatattttttgcttttagccatcggagggatgta 8933191  T
Q  379 atcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||  ||||||||| |||||| ||| |||||||| ||||||| |||| | ||| |  ||||||||||||||    
T  8933190 atcttagtcttctcaaggagttgcgctgctgttttagttgtgttggcaaaaagtctttggtttctttcattcca 8933117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 26017761 - 26017669
Alignment:
Q  273 aataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||| || |||||| |||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  26017761 aataaaacctcagcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaaacacacatttttggctttcaacca 26017669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 10009746 - 10009663
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  10009746 tcagcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaaacacacatttttagctttcaacca 10009663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 365
Target Start/End: Original strand, 7446334 - 7446426
Alignment:
Q  273 aataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||| || |||||| |||||||||||| |||||||| |||||||||| |||||||||||||||||||| |||| |||||| |||||||||||    
T  7446334 aataaaacctcagcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacatatttttagctttcaacca 7446426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 32045601 - 32045521
Alignment:
Q  281 atcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttca 361  Q
    |||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  32045601 atcagccaatccctaaacaaacaaggggatgctgccaccatgaatgataaccaaaaggaaagcacacatttttagctttca 32045521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 366
Target Start/End: Original strand, 14528328 - 14528415
Alignment:
Q  279 acatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    |||||| |||||||  |||||||||| |||| |||||| ||||| ||| ||||||||||| || ||||||||||| | ||||||||||    
T  14528328 acatcaaccaatcctcaaacaagcaaagggatgctgccgccacatatggtaaccaaaagggaagcacacatttttagatttcaaccat 14528415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 25459576 - 25459497
Alignment:
Q  287 caatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    ||||||| ||||||||||||||   ||||||||||| ||||||| |||||||||| || |||||||  ||||||||||||    
T  25459576 caatccccaaacaagcaagggggttctgccaccacatatgataatcaaaaggaaagcatacattttaagctttcaaccat 25459497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 38654697 - 38654775
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| |||||||| |||||||||| |||||||||||     |||||||||| ||||| |||||||||||    
T  38654697 tcagcctatccctaaacaaacaaggggatgctgccaccataaatgataacc-----gaaaacacacttttttagctttcaacca 38654775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 36188698 - 36188748
Alignment:
Q  316 caccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||||||||    
T  36188698 caccacatatgataaccaaaaggaaaacaaacatttttagctttcaaccat 36188748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 366
Target Start/End: Original strand, 2398395 - 2398488
Alignment:
Q  273 aataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    ||||| ||||||| | ||||| |||||  ||| |||| ||| |||||| |||||||||  |||||||||||| ||||||||  |||||||||||    
T  2398395 aataaaacatcagtctatcccaaaacagacaaagggatgctaccaccataaatgataattaaaaggaaaacatacatttttaactttcaaccat 2398488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 5592390 - 5592314
Alignment:
Q  311 gctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatgtaatcttaacc 387  Q
    |||||||||||||||| ||  |||| ||||| ||||||||||| ||||||||||||   || |||||||| ||||||    
T  5592390 gctgccaccacaaatggtagtcaaagggaaatcacacatttttagctttcaaccatcgaagggatgtaattttaacc 5592314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 48125980 - 48126056
Alignment:
Q  311 gctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatgtaatcttaacc 387  Q
    |||||||||||||||| ||  |||| ||||| ||||||||||| ||||||||||||   || |||||||| ||||||    
T  48125980 gctgccaccacaaatggtagtcaaagggaaatcacacatttttagctttcaaccatcgaagggatgtaattttaacc 48126056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 42766208 - 42766258
Alignment:
Q  311 gctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttca 361  Q
    |||||||||||||||| |||||||||| |||||| | |||||| |||||||    
T  42766208 gctgccaccacaaatggtaaccaaaagtaaaacaaatatttttagctttca 42766258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 20248818 - 20248770
Alignment:
Q  313 tgccaccacaaatgataaccaaaaggaaaacacacattttttgctttca 361  Q
    |||||||||| ||| ||||||||||||||| | |||||||| |||||||    
T  20248818 tgccaccacatatggtaaccaaaaggaaaatagacatttttagctttca 20248770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 21479267 - 21479319
Alignment:
Q  313 tgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||||| |||||||||||||||||| || ||||| || | |||||||||    
T  21479267 tgccaccacatatgataaccaaaaggaaagcaaacattcttagatttcaacca 21479319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 42674945 - 42674993
Alignment:
Q  311 gctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
    |||||||||||| |||||||||||||||||| ||  ||||||| |||||    
T  42674945 gctgccaccacatatgataaccaaaaggaaatcattcatttttagcttt 42674993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 34205791 - 34206083
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34205791 aatgagatatattaacaaagagttttgttccctagcacaaggagtgccaaaggagacaaaacaaggttacaaaatagttccaatcaaaccacaaaagata 34205890  T
Q  267 tgaacgaataatac-------atcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
    |||||||| |||||       ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  34205891 tgaacgaaaaatacatcatacatcagccaatccctaaacaagtaaggggacgctgccaccataaatgataaccaaaaggaaagcacacattttttgcttt 34205990  T
Q  360 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34205991 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 34206083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 4163500 - 4163792
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  4163500 aatgagatatattaataaagagttttgttccctagcacaaggagtgccaaaggagacaaaacaaagttacaaaatagttccaatcaaaccacaaaagata 4163599  T
Q  267 tgaacgaataatac-------atcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
    |||||||| |||||       |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  4163600 tgaacgaaaaatacatcatacatcagccaatccctaaacaagcaaggggacgctgccgccataaatgataaccaaaaggaaagcacacattttttgcttt 4163699  T
Q  360 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4163700 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgtattagctgtgttgacaaacaatctattatttctttcattcca 4163792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 43109583 - 43109291
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  43109583 aatgagatatattaataaagagttttgttccctagcacaaggagtgccaaaggagacaaaacaaagttacaaaatagttccaatcaaaccacaaaagata 43109484  T
Q  267 tgaacgaataatacatca-------gccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
    |||||||| |||||||||       | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  43109483 tgaacgaaaaatacatcatacatcagtcaatccctaaacaagcaaggggacgctgccgccataaatgataaccaaaaggaaagcacacattttttgcttt 43109384  T
Q  360 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43109383 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgtattagctgtgttgacaaacaatctattatttctttcattcca 43109291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 45458902 - 45459185
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaag--a 264  Q
    ||||||||||||||||||| | |||||| |||||||| ||| |||| ||||||| ||||||||| |||| || | |||| | |||||| || |||||  |    
T  45458902 aatgagatatattaacaaa-agttttgtaccctagcacaagaagtgccaaaggaaacaaaacaaagttacaacaaagtttcgatcaaaacagaaaaggaa 45459000  T
Q  265 tatgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacc 364  Q
     || || ||  ||   ||||||||||||| |||||||||| |||||| || ||| ||| |||||||||||| ||||| ||||||||||||||||||||||    
T  45459001 aataaaagagcaa---atcagccaatccccaaacaagcaaagggacgttgtcactacatatgataaccaaatggaaagcacacattttttgctttcaacc 45459097  T
Q  365 atttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    | ||||||||||||||||||||||||||||| | |||| |||||||| | ||||||||  ||| || ||| |  ||||||||||||||    
T  45459098 acttgagagatgtaatcttaaccttctcaagtaattgcactgttgttcttgctgtgttagcaaccagtctttggtttctttcattcca 45459185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 39296045 - 39295760
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaacca-caaaagat 265  Q
    |||||| || ||||||||| | ||||| ||||||||| |||||||| | ||||| | |||||||||||| || | |||| |  |||||||| |||||||     
T  39296045 aatgagttaaattaacaaaaagttttgatccctagcacaaggagtgcctaaggaaataaaacaaggttacaacaaagtttcggtcaaaccaacaaaagac 39295946  T
Q  266 atgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |  || ||| || ||||||| ||||||| ||||||  ||||||| |||||||||||| || ||||||||| | ||| ||||||||||||| |||||||||    
T  39295945 aaaaaagaaaaa-acatcagtcaatccccaaacaaataaggggatgctgccaccacatataataaccaaatgaaaagcacacattttttgttttcaacca 39295847  T
Q  366 tttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    | |||||||| ||||||||||||||||||| | ||||  ||||||||||| ||||||| |||| | ||| |  ||||||||||||||    
T  39295846 tctgagagatataatcttaaccttctcaagtaattgcgttgttgttttagttgtgttggcaaatagtctttggtttctttcattcca 39295760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 5652001 - 5651939
Alignment:
Q  303 aaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  5652001 aaggggatgctgccaccacaaatgataaccaaaagaaaaacacacatttttagctttcaacca 5651939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 21431477 - 21431401
Alignment:
Q  289 atccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||||||| |||||||| | |||||||| |||||||||||||||| ||| ||||||||||| |||||||||||    
T  21431477 atccctaaacaaacaaggggatgttgccaccataaatgataaccaaaagaaaagcacacatttttagctttcaacca 21431401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 32703038 - 32703121
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| |||||||| |||||||||| |||| ||||||||||| ||| ||||| ||||| |||||||||||    
T  32703038 tcagcctatccctaaacaaacaaggggatgctgccaccataaattataaccaaaagaaaagcacacttttttagctttcaacca 32703121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 18014897 - 18014982
Alignment:
Q  281 atcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacaca-ttttttgctttcaacca 365  Q
    |||| |||||||| |||||||||| ||||||||||||||||| ||||||| ||||   |||||||||| |||||||||||||||||    
T  18014897 atcaaccaatccccaaacaagcaaagggacgctgccaccacatatgataatcaaataaaaaacacacatttttttgctttcaacca 18014982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 8606986 - 8606909
Alignment:
Q  288 aatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||| |||||||  ||| |||||||| ||| |||||||||||||| ||  ||||||| |||||||||||    
T  8606986 aatccccaaacaaacaaggggttgctcccaccacatatggtaaccaaaaggaaagcaagcatttttagctttcaacca 8606909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 8567621 - 8567685
Alignment:
Q  295 aaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
    |||||||||| |||  ||||||||||||||||||||||||| ||||||   || |||||||||||    
T  8567621 aaacaagcaaagggttgctgccaccacaaatgataaccaaagggaaaaacaactttttttgcttt 8567685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 39297747 - 39297679
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggtta 235  Q
    |||||| |||||||||||| | ||||| ||||||||  |||||||||| ||||| | ||||||||||||    
T  39297747 aatgagttatattaacaaaaagttttgatccctagctgaaggagtgtctaaggaaataaaacaaggtta 39297679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 46641089 - 46641157
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggtta 235  Q
    ||||||||||||||||||| | ||||| |||||| || || ||||||| ||||| ||||||||| ||||    
T  46641089 aatgagatatattaacaaaaagttttggtccctaacacaatgagtgtctaaggaaacaaaacaaagtta 46641157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 10386592 - 10386300
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  10386592 aatgagatatattaataaagagttttgttccctagcacaaggagtgccaaaggagacaaaacaaagttacaaaatagttccaatcaaaccacaaaagata 10386493  T
Q  267 tgaacgaataatacatca-------gccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgcttt 359  Q
    |||||||| |||||||||       |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  10386492 tgaacgaaaaatacatcatacatcagccaatccctaaacaagcaaggggacgctgccgccataaatgataaccaaaaggaaagcacacattttttgcttt 10386393  T
Q  360 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10386392 caaccatttgagagatgtaatcttaaccttctcaagaagttgctctgttgtattagctgtgttgacaaacaatctattatttctttcattcca 10386300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 167 - 395
Target Start/End: Complemental strand, 6333302 - 6333075
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||||||| | ||||| ||||||||| |||||||| |||| ||||||||||||  ||| |||  |||||| |||||||||||||| |||    
T  6333302 aatgagatatattaacaaaaagttttgatccctagcacaaggagtgccaaaagagacaaaacaaaattacaaag-agttccgatcaaaccacaaaaaata 6333204  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
      || ||| |||||||||||||||||| ||||||| ||||||||| |||||||||| ||| |||||||||||||| |||||||||||| |||||||||||    
T  6333203 acaaggaaaaatacatcagccaatccccaaacaagtaaggggacgttgccaccacatatggtaaccaaaaggaaagcacacatttttttctttcaaccat 6333104  T
Q  367 ttgagagatgtaatcttaaccttctcaag 395  Q
    || |||||| |||||||||||||||||||    
T  6333103 ttaagagatataatcttaaccttctcaag 6333075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 277 - 452
Target Start/End: Original strand, 51169660 - 51169834
Alignment:
Q  277 atacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatg 376  Q
    ||||||||||||||||| |||||| | |||||| |||||||||||| ||||||||||||||| ||||| |||||||||| ||||| |||    |||||||    
T  51169660 atacatcagccaatccc-aaacaaaccaggggatgctgccaccacacatgataaccaaaagggaaacaaacattttttgttttcatccaacgaagagatg 51169758  T
Q  377 taatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttctttcattcca 452  Q
    | ||||| || ||||||||||||||   ||||||||||||||||||   ||| | ||| | |||||||||||||||    
T  51169759 tgatcttgactttctcaagaagttgtgttgttgttttagctgtgtttgtaaagagtctttgatttctttcattcca 51169834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 31458838 - 31458921
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  31458838 tcagcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 31458921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 35368488 - 35368405
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  35368488 tcagcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 35368405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 36193355 - 36193272
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| |||||||| |||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||    
T  36193355 tcagcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaagaaaagcacacatttttagctttcaacca 36193272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 32641454 - 32641537
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||   ||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  32641454 tcagcctatccctaaacacagaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 32641537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 24561624 - 24561548
Alignment:
Q  289 atccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||||||||||||||||   | |||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  24561624 atccctaaacaagcaaggggattttaccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 24561548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 51128502 - 51128585
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| ||| |||| |||||||||| |||||||||||||||| ||| ||||||||||| | |||||||||    
T  51128502 tcagcctatccctaaacaaacaaagggatgctgccaccataaatgataaccaaaagaaaagcacacatttttagttttcaacca 51128585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 22560337 - 22560261
Alignment:
Q  287 caatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaac 363  Q
    ||||||| ||||||||||||||  |||||||||  |||||||||||||||||||| || |||||||| |||||||||    
T  22560337 caatccccaaacaagcaaggggttgctgccaccgtaaatgataaccaaaaggaaagcaaacatttttagctttcaac 22560261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 38029861 - 38029786
Alignment:
Q  286 ccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttca 361  Q
    ||||| || ||||| ||||| ||  |||||||||||||||| ||||||||||||||||| || ||||| |||||||    
T  38029861 ccaatgcccaaacatgcaagaggttgctgccaccacaaatggtaaccaaaaggaaaacaaacttttttggctttca 38029786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 22816568 - 22816621
Alignment:
Q  313 tgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    |||||||||| ||||||||||||||||||| | |||||||| ||||||| ||||    
T  22816568 tgccaccacatatgataaccaaaaggaaaatatacatttttagctttcagccat 22816621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 51169552 - 51169605
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaagga 220  Q
    ||||||||||||||||||| | ||||| ||||||||| ||||||||||| ||||    
T  51169552 aatgagatatattaacaaaaagttttggtccctagcacaaggagtgtcatagga 51169605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 18606151 - 18606194
Alignment:
Q  311 gctgccaccacaaatgataaccaaaaggaaaacacacatttttt 354  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  18606151 gctgccaccacatatgataaccaaaagaaaaacaaacatttttt 18606194  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 39415808 - 39415863
Alignment:
Q  312 ctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatt 367  Q
    ||||||||||| ||| |||||||| ||||| || |||||||| |||||||||||||    
T  39415808 ctgccaccacatatggtaaccaaagggaaagcaaacatttttagctttcaaccatt 39415863  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 22174736 - 22174781
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtg 212  Q
    ||||||||||||||||||| | ||||| ||||||||| ||||||||    
T  22174736 aatgagatatattaacaaaaagttttggtccctagcacaaggagtg 22174781  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 20417661 - 20417613
Alignment:
Q  313 tgccaccacaaatgataaccaaaaggaaaacacacattttttgctttca 361  Q
    |||||| ||||||| |||| |||||||||||| |||||||| |||||||    
T  20417661 tgccactacaaatggtaactaaaaggaaaacaaacatttttagctttca 20417613  T

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Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 167 - 443
Target Start/End: Original strand, 3417435 - 3417711
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||| ||||||||| |||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |    
T  3417435 aatgagatataataacaaagagttttattccctagcacaaggagtgccaaaggagacaaaacaaggttacaaaatagtttcaatcaaaccacaaaagaca 3417534  T
Q  267 tgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 366  Q
    | ||| || |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| |||    
T  3417535 tcaacaaaaaatacatcagtcaatccctaaacaagcaaggggacgctgccaccacatatgataaccaaaaggaaagcacacattttgtgctttcaatcat 3417634  T
Q  367 ttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttgacaaacaatctattatttct 443  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  3417635 ttgagagatgtaatcttaaccttctcaagaagttgctatgttggtttagctgtgttgacaaacaatcttttatttct 3417711  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 41611041 - 41611206
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaagata 266  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  41611041 aatgagatatattaataaagagttttgttccctagcacaaggaatgccaaaggagacaaaacaaagttacaaaatagttccaatcaaaccacaaaagata 41611140  T
Q  267 tgaacga-------ataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaat 325  Q
    |||||||       || |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  41611141 tgaacgaaaaatacatcatacatcagccaatccctaaacaagcaaggggacgctgccgccataaat 41611206  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 167 - 423
Target Start/End: Original strand, 841447 - 841708
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaacca-caaaagat 265  Q
    |||| |||||||||||| | | ||||| ||| ||||| ||||||||   ||||| | ||||||||||||||| | |||||| ||||||  | ||||||||    
T  841447 aatgtgatatattaacataaagttttgatccttagcacaaggagtgcttaaggaaataaaacaaggttataacaaagttccgatcaaaataacaaaagat 841546  T
Q  266 atgaacgaata--atacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacat--tttttgctttca 361  Q
    |  || ||| |  ||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||  |||| ||||| |||||||  ||||||||||||    
T  841547 aacaaagaaaacaatacatcagtcaatccccaaacaagcaaggggacgttgccaccacatatgatacacaaatggaaagcacacatattttttgctttca 841646  T
Q  362 accatttgagagatgtaatcttaaccttctcaagaagttgctctgttgttttagctgtgttg 423  Q
    ||||||||||||||||||| |||||||||||||| | ||||  ||||||||| | |||||||    
T  841647 accatttgagagatgtaattttaaccttctcaagtaattgcaatgttgtttttgttgtgttg 841708  T

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Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 378
Target Start/End: Original strand, 2680604 - 2680816
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaa-tagttccaatcaaa-ccacaaaaga 264  Q
    ||||| ||||||||||| | | ||||| ||||||||| |||||||| ||||||| |||||||||| ||| |||| |||| || |||||| ||| ||||||    
T  2680604 aatgaaatatattaacacaaagttttggtccctagcacaaggagtgccaaaggaaacaaaacaagattacaaaaatagtaccgatcaaaaccaaaaaaga 2680703  T
Q  265 tatgaacgaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacc 364  Q
     |  || ||| ||||||| |||||||||| ||||| |||||||| ||||||||||||| |||||||||||| ||||| || ||||||  |||||||||||    
T  2680704 cagcaaggaaaaatacataagccaatccc-aaacatgcaagggggcgctgccaccacatatgataaccaaatggaaagcatacatttaatgctttcaacc 2680802  T
Q  365 atttgagagatgta 378  Q
    ||||||||||||||    
T  2680803 atttgagagatgta 2680816  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 365
Target Start/End: Complemental strand, 28639323 - 28639230
Alignment:
Q  272 gaataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| || |||||| |||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  28639323 gaataaaacctcagcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttggctttcaacca 28639230  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 10468809 - 10468892
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| |||||||| ||| |||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  10468809 tcagcctatccctaaacaaacaaggggatgcttccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 10468892  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 26501413 - 26501497
Alignment:
Q  282 tcagccaatccctaaacaagcaagggg-acgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||| |||||||||||| ||||||| | |||||||||| |||||||||||||||||| | ||||||||||| |||||||||||    
T  26501413 tcagcctatccctaaacaaacaagggggatgctgccaccataaatgataaccaaaaggagagcacacatttttagctttcaacca 26501497  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 42495283 - 42495390
Alignment:
Q  279 acatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatgta 378  Q
    ||||||| ||||||| |||||| |||||||  ||| |||||||| |||||||||||||| ||||||||||||||| ||||||| |||    |||||||||    
T  42495283 acatcagtcaatccccaaacaa-caagggg--gctaccaccacatatgataaccaaaagaaaaacacacatttttggctttcagccaccaaagagatgta 42495379  T
Q  379 atcttaacctt 389  Q
    |||||||||||    
T  42495380 atcttaacctt 42495390  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 16422246 - 16422154
Alignment:
Q  273 aataatacatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||| ||||||| ||||||  |||||| |||||||| |||||||||||| |||| || ||| || ||||||||||||||| |||||||||||    
T  16422246 aataaaacatcagtcaatcctcaaacaaacaaggggatgctgccaccacatatgacaatcaagagaaaaacacacatttttagctttcaacca 16422154  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 33023619 - 33023571
Alignment:
Q  313 tgccaccacaaatgataaccaaaaggaaaacacacattttttgctttca 361  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  33023619 tgccgccacatatgataaccaaaaggaaaacacacatttttagctttca 33023571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 40526063 - 40526010
Alignment:
Q  313 tgccaccaca-aatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||||| |||||||||||||| ||||||| |||||||| |||||||||||    
T  40526063 tgccaccacataatgataaccaaaaagaaaacatacatttttagctttcaacca 40526010  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 38707185 - 38707237
Alignment:
Q  313 tgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    |||||||||| |||||||||||||||||| || |||||| | |||||||||||    
T  38707185 tgccaccacatatgataaccaaaaggaaagcaaacatttctagctttcaacca 38707237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 27017528 - 27017487
Alignment:
Q  312 ctgccaccacaaatgataaccaaaaggaaaacacacattttt 353  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||    
T  27017528 ctgccaccacatatggtaaccaaaaggaaaacaaacattttt 27017487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 402
Target Start/End: Complemental strand, 8355 - 8235
Alignment:
Q  282 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccatttgagagatgtaatc 381  Q
    |||||||||||| |||||| | ||||| ||||||||||||| ||| |||||||||||||| || |||||||| |||||||||||  | ||||| ||||||    
T  8355 tcagccaatccccaaacaatctaggggtcgctgccaccacatatggtaaccaaaaggaaagcaaacatttttagctttcaaccaggtaagagaagtaatc 8256  T
Q  382 ttaaccttctcaagaagttgc 402  Q
    || ||||| || | |||||||    
T  8255 ttgaccttttccataagttgc 8235  T

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Target: scaffold0394 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 5347 - 5261
Alignment:
Q  279 acatcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttgctttcaacca 365  Q
    ||||||| ||||||| |||||| ||| |||| ||||  |||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  5347 acatcagtcaatccccaaacaaacaaagggatgctgttaccataaatgataaccaaaaggaaaacatacatttttagctttcaacca 5261  T

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Target: scaffold0649 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 7815 - 7721
Alignment:
Q  167 aatgagatatattaacaaagaattttgttccctagcataaggagtgtcaaaggagacaaaacaaggttataaaatagttccaatcaaaccacaaaa 262  Q
    ||||||||||||||||||| | ||||| ||||||||||||| |||| ||||||| |||||| ||| |||  |||||||||| ||||||||| ||||    
T  7815 aatgagatatattaacaaaaagttttgatccctagcataagaagtgccaaaggaaacaaaataagatta-caaatagttccgatcaaaccataaaa 7721  T

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