View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13850_low_13 (Length: 452)

Name: NF13850_low_13
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13850_low_13
NF13850_low_13
[»] chr2 (4 HSPs)
chr2 (111-418)||(33861051-33861361)
chr2 (138-420)||(34691069-34691349)
chr2 (138-420)||(34713481-34713761)
chr2 (346-420)||(16232624-16232698)
[»] chr4 (2 HSPs)
chr4 (19-148)||(19964724-19964853)
chr4 (138-428)||(4231709-4231999)
[»] chr1 (13 HSPs)
chr1 (74-428)||(7890797-7891151)
chr1 (138-420)||(45993253-45993535)
chr1 (138-428)||(3300972-3301262)
chr1 (84-425)||(7888535-7888876)
chr1 (138-428)||(43045236-43045526)
chr1 (138-428)||(43045689-43045979)
chr1 (138-428)||(43066428-43066718)
chr1 (138-428)||(43084117-43084407)
chr1 (111-413)||(38137628-38137930)
chr1 (345-428)||(51292064-51292147)
chr1 (111-428)||(45983465-45983776)
chr1 (352-428)||(40034453-40034529)
chr1 (228-417)||(43076553-43076741)
[»] chr8 (4 HSPs)
chr8 (74-425)||(1846570-1846921)
chr8 (342-417)||(4787274-4787349)
chr8 (232-418)||(4620026-4620212)
chr8 (345-413)||(4297922-4297990)
[»] chr5 (2 HSPs)
chr5 (139-413)||(16349382-16349656)
chr5 (19-50)||(16349120-16349151)
[»] chr6 (3 HSPs)
chr6 (364-428)||(7528843-7528907)
chr6 (154-307)||(7519593-7519746)
chr6 (154-307)||(7528964-7529117)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 111 - 418
Target Start/End: Original strand, 33861051 - 33861361
Alignment:
Q  111 cttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagca 210  Q
    ||||||||||||||| |||||| ||||||||||||||| | |||| ||||| ||||||||||||||| |||||| |||||||||||||  ||||||| ||    
T  33861051 cttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccatgcttagaaaaaccaacttcaaaacca 33861150  T
Q  211 ccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatag 310  Q
    |||||||  ||||| |||||||||||||| |||||||| | ||||| ||||||||||||||| | |||  ||||||| ||||||| ||||||||||| ||    
T  33861151 ccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatataatccctgtgtccaggggcatcaatgacag 33861250  T
Q  311 tgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcaccca---agcata 407  Q
    |||| | |   |    ||| ||||||||  |||||||||||||||| | ||||||||||||||||||||||  ||| |||||||| |||||   ||||||    
T  33861251 tgtaccggtactggtttgtctcaaaattacgcatagaaacgtcaatggagatacctctttcacgctcagcctcgagcttgtcaagaacccaattagcata 33861350  T
Q  408 cttgaatgaac 418  Q
    |||||||||||    
T  33861351 cttgaatgaac 33861361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 138 - 420
Target Start/End: Original strand, 34691069 - 34691349
Alignment:
Q  138 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 237  Q
    ||||||||||| | ||||||||||||||||||| | |||| |||||| ||||||  |||||  |   ||| | | || ||| ||||| | ||  |||| |    
T  34691069 cacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaaca 34691168  T
Q  238 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 337  Q
    ||||| ||||| ||||| | |||  | |||||||| | |||||||||||| ||||| |  |||||||||| |||| |||||   || | ||| ||||| |    
T  34691169 gcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaact 34691268  T
Q  338 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgc 420  Q
    |  ||||||||| ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  34691269 t--gcatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgc 34691349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 138 - 420
Target Start/End: Original strand, 34713481 - 34713761
Alignment:
Q  138 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 237  Q
    ||||||||||| | ||||||||||||||||||| | |||| |||||| ||||||  |||||  |   ||| | | || ||| ||||| | ||  |||| |    
T  34713481 cacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacctctagtagtcgaatcaatgacgagaaca 34713580  T
Q  238 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 337  Q
    ||||| ||||| ||||| | |||  | |||||||| | |||||||||||| ||||| |  |||||||||| |||| |||||   || | ||| ||||| |    
T  34713581 gcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaact 34713680  T
Q  338 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgc 420  Q
    |  ||||||||| ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  34713681 t--gcatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgc 34713761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 346 - 420
Target Start/End: Original strand, 16232624 - 16232698
Alignment:
Q  346 gaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgc 420  Q
    |||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  16232624 gaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgc 16232698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 19964853 - 19964724
Alignment:
Q  19 caaccaagttatctccctcaaaaccagagatgaagtatccttttaatttctagaaacctatccatggagtatgtaggtgttgtggcatccatcttgttga 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19964853 caaccaagttatctcgctcaaaaccagagatgaagtatccttttaatttctagaaacctatccatggagtatgtaggtgttgtggcatccatcttgttga 19964754  T
Q  119 tgcagcaaatcattcgaggcacaccaagag 148  Q
    |||||||||||||| ||||||||| |||||    
T  19964753 tgcagcaaatcattggaggcacacgaagag 19964724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 138 - 428
Target Start/End: Original strand, 4231709 - 4231999
Alignment:
Q  138 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 237  Q
    ||||||||||| | | ||||| |||||||||||||| ||| |||||||||| |||| ||||  ||||||| ||||||  || ||||| | ||| |||| |    
T  4231709 cacaccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagcttcaaaaccaccagtggtggaatcaatgatgagaaca 4231808  T
Q  238 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 337  Q
    ||||||||||| |||||||  ||| |||||||||| | |||||||||||| ||||||| ||||||||||| |||| || ||   || |  || ||||| |    
T  4231809 gcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaact 4231908  T
Q  338 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 428  Q
    ||  || || || ||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||| |||||||    
T  4231909 tccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttaaatgaacgcttgttcat 4231999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 74 - 428
Target Start/End: Complemental strand, 7891151 - 7890797
Alignment:
Q  74 acctatccatggagtatgtaggtgttgtggcatccatcttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacg 173  Q
    |||||||| |||||||| | ||||| |||||||||||||||||    ||||| |||||| | |  |||||||||||| | |||||  || ||||||||      
T  7891151 acctatccttggagtatttgggtgtagtggcatccatcttgttacaacagcagatcatttgtgaaacaccaagagcgaatgcaagttgaacatgttcagt 7891052  T
Q  174 ggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgtta 273  Q
    |||| |||||| |||| ||||||||   |||||| ||||| | |||||||| | |||||||| |||||| ||||| | ||| |  ||| | ||||||||     
T  7891051 ggtctgaccattcttacaaaaaccagcgtcaaaaccaccaagtgtagaatcaatgataagaacagcacagtcagcttcggacgctccagtgatcatgttc 7890952  T
Q  274 tgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcac 373  Q
    | |||||||||||| ||||||| ||||||||||| |||| ||| |  ||| | ||| ||||| |||  || ||||| |||||||||||||||||||||||    
T  7890951 ttaatgaaatccctgtgtccaggggcatcaatgagagtgcagcggaagttggttgtctcaaacttccacagagaaatgtcaattgtgatacctctttcac 7890852  T
Q  374 gctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 428  Q
    |||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||    
T  7890851 gctcggccttgagcttgtcaagcacccaagcatacttgaatgaatgcctgttcat 7890797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 138 - 420
Target Start/End: Complemental strand, 45993535 - 45993253
Alignment:
Q  138 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 237  Q
    ||||||||||| | |||||||||||||||||||||| ||| |||||||||| |||| |||   ||||||| ||| || ||| ||||| | ||| |||| |    
T  45993535 cacaccaagagtgaaggcaagaagagcatgttcacgagtctgaccatcctttgaaataccggcttcaaaaccacgagtagtggaatcaatgatgagaaca 45993436  T
Q  238 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 337  Q
    ||||||||||| ||||| | |||  | |||||||| | |||||||||||| ||||| | ||||||||||| |||| ||| |   ||   ||| ||||| |    
T  45993435 gcacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaatgacagtgcagctgtacttgtttgtctcaaact 45993336  T
Q  338 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgc 420  Q
    ||  || ||||  ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  45993335 tcgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaagcacccaagcatacttgaatgaacgc 45993253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 138 - 428
Target Start/End: Original strand, 3300972 - 3301262
Alignment:
Q  138 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 237  Q
    ||||||||||| | | ||||||||||| |||||||||||| | |||||||| || | |||   ||||||| |||| | ||| ||||| | ||| |||| |    
T  3300972 cacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgatataccggcttcaaaaccaccggtagtggaatcaatgatcagaaca 3301071  T
Q  238 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 337  Q
    ||||||||||| |||||||  ||| |||||||||| | |||||||||||| ||||| | ||||||||||| |||| || ||   || |  || ||||| |    
T  3301072 gcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaact 3301171  T
Q  338 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 428  Q
    ||  || || || |||||||||||||||||||||||  |||||| |||| ||||| ||||||||||||||||||||||||||| |||||||    
T  3301172 tccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcat 3301262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 84 - 425
Target Start/End: Complemental strand, 7888876 - 7888535
Alignment:
Q  84 ggagtatgtaggtgttgtggcatccatcttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacgggtccgacca 183  Q
    ||||||| | ||||| ||||||||||||||||||  |||||| ||||||      ||||| |||||| |||||||  || ||||||||  |||| |||||    
T  7888876 ggagtatatgggtgtagtggcatccatcttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgacca 7888777  T
Q  184 tccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaat 283  Q
    |||||| |||||||   ||||||| ||||||  || ||||| | ||| |||| |||||||||||| |  || | |||  | |||||||| |  |||||||    
T  7888776 tccttacaaaaaccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaat 7888677  T
Q  284 ccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccat 383  Q
    |||| ||||| | ||||||||||| |||| |||||  | | | ||| | ||| |||   | ||||| ||||||||||||||||||||||||||||||| |    
T  7888676 ccctgtgtccgggggcatcaatgagagtgcagcagtagctggttgtctgaaacttccaaagagaaatgtcaattgtgatacctctttcacgctcagcctt 7888577  T
Q  384 gagtttgtcaagcacccaagcatacttgaatgaacgcctgtt 425  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  7888576 gagtttgtcaagcacccaagcatacttgaataaacgtctgtt 7888535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 138 - 428
Target Start/End: Original strand, 43045236 - 43045526
Alignment:
Q  138 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 237  Q
    ||||||||||| | | ||||| |||||||||||||||||| ||||||||||||||| |||   ||||||| |||||| ||| ||||| | ||| ||||      
T  43045236 cacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacg 43045335  T
Q  238 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 337  Q
    ||||||||||| |||||||  ||  | |||||||| | |||||||||||| ||||| | |||||| |||| |||| || ||   || | ||| ||||| |    
T  43045336 gcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaact 43045435  T
Q  338 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 428  Q
    ||   | || || |||||| ||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||| |||||||    
T  43045436 tccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcat 43045526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 138 - 428
Target Start/End: Original strand, 43045689 - 43045979
Alignment:
Q  138 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 237  Q
    ||||||||||| | | ||||| |||||||||||||||||| ||||||||||||||| |||   ||||||| |||||| ||| ||||| | ||| ||||      
T  43045689 cacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacg 43045788  T
Q  238 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 337  Q
    ||||||||||| |||||||  ||  | |||||||| | |||||||||||| ||||| | |||||| |||| |||| || ||   || | ||| ||||| |    
T  43045789 gcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaact 43045888  T
Q  338 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 428  Q
    ||   | || || |||||| ||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||| |||||||    
T  43045889 tccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcat 43045979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 138 - 428
Target Start/End: Complemental strand, 43066718 - 43066428
Alignment:
Q  138 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 237  Q
    ||||||||||| | | ||||| |||||||||||||||||| ||||||||||||||| |||   ||||||| |||||| ||| ||||| | ||| ||||      
T  43066718 cacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacg 43066619  T
Q  238 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 337  Q
    ||||||||||| |||||||  ||  | |||||||| | |||||||||||| ||||| | |||||| |||| |||| || ||   || | ||| ||||| |    
T  43066618 gcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaact 43066519  T
Q  338 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 428  Q
    ||   | || || |||||| ||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||| |||||||    
T  43066518 tccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaagaacccaggcatacttgaatgaacgcttgttcat 43066428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 138 - 428
Target Start/End: Original strand, 43084117 - 43084407
Alignment:
Q  138 cacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaaga 237  Q
    ||||||||||| | | ||||| |||||||||||||||||| ||||||||||||||| |||   ||||||| |||||| ||| ||||| | ||| ||||      
T  43084117 cacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacg 43084216  T
Q  238 gcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaat 337  Q
    ||||||||||| |||||||  ||  | |||||||| | |||||||||||| ||||| | |||||| |||| |||| || ||   || | ||| ||||| |    
T  43084217 gcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaact 43084316  T
Q  338 tctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 428  Q
    ||   | || || |||||| ||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||| |||||||    
T  43084317 tccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcat 43084407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 111 - 413
Target Start/End: Complemental strand, 38137930 - 38137628
Alignment:
Q  111 cttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagca 210  Q
    |||||||  |||||| |||||| |  ||||||||||| || | ||||||||||||||||||  |||| |||| |||| |||| |||||  |||||||  |    
T  38137930 cttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaacta 38137831  T
Q  211 ccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatag 310  Q
    ||||  || ||||| | ||  |||| |||||| ||||| ||||| | |||  |||||||||| | |||||||||||| ||||| | ||||||||||| ||    
T  38137830 ccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagag 38137731  T
Q  311 tgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatactt 410  Q
    || || ||   || |  || ||||| ||   || ||||| |||||| |||||||||||||||||||| ||| |||| ||||| |||||||||||||||||    
T  38137730 tgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcacgctcggccttgagcttgtcgagcacccaagcatactt 38137631  T
Q  411 gaa 413  Q
    |||    
T  38137630 gaa 38137628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 345 - 428
Target Start/End: Original strand, 51292064 - 51292147
Alignment:
Q  345 agaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 428  Q
    ||||| ||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||| |||||||    
T  51292064 agaaatgtcaattgtgatacctctttcacgctcagccttgaacttgtcaagcacccaagcatacgtgaatgaacgcatgttcat 51292147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 111 - 428
Target Start/End: Complemental strand, 45983776 - 45983465
Alignment:
Q  111 cttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagca 210  Q
    |||||||  |||||| |||||| ||  ||||||||||| | |||||||||||||||||||||||||| |||||| | ||      ||   ||||||| ||    
T  45983776 cttgttgcagcagcagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgggtctgaccattcata------ccggcttcaaaacca 45983683  T
Q  211 ccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatag 310  Q
    |||| ||| ||||| | ||  |||| |||||| ||||| ||||| |  ||  | |||||||| | |||||||||||| ||||| | ||||||||||| ||    
T  45983682 ccagtagtggaatcaatgacgagaacagcacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacag 45983583  T
Q  311 tgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatactt 410  Q
    || ||  |   ||   ||| ||||| |||  ||  | || ||||||||| | |||||||||||| |||||| |||| |||||||||||||||||||||||    
T  45983582 tgcagttgtacttgtttgtctcaaacttcgacagggtaatgtcaattgtaacacctctttcacgttcagccttgagcttgtcaagcacccaagcatactt 45983483  T
Q  411 gaatgaacgcctgttcat 428  Q
    |||||||||| |||||||    
T  45983482 gaatgaacgcttgttcat 45983465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 40034529 - 40034453
Alignment:
Q  352 tcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 428  Q
    |||||||| | ||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||| |||||||    
T  40034529 tcaattgtaacacctctttcacgctcagccttgagcttgtcaagtacccaagcatacttgaatgagcgcttgttcat 40034453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 417
Target Start/End: Complemental strand, 43076741 - 43076553
Alignment:
Q  228 gataagaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggt 327  Q
    ||||||||||||||||||||| ||||| | |||| | |||||||| | |||||||| | | ||||| | | ||||||||| |  | |||||   |||| |    
T  43076741 gataagaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcccgggacatcaatgacaacgcagcagttctttgtt 43076642  T
Q  328 gtttcaaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaa 417  Q
    || ||||| |||   | |||||  ||||| || |||||||||||||| |||||| |||| |||||||| | ||| |||||||||| ||||    
T  43076641 gtctcaaacttccagagagaaatctcaatggt-atacctctttcacgttcagccctgagcttgtcaaggatccaggcatacttgactgaa 43076553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 74 - 425
Target Start/End: Original strand, 1846570 - 1846921
Alignment:
Q  74 acctatccatggagtatgtaggtgttgtggcatccatcttgttgatgcagcaaatcattcgaggcacaccaagagcggaggcaagaagagcatgttcacg 173  Q
    |||||||| |||||||| | ||||| |||||||||||||||||   |||||| |||||| | |  |||||||||||| |||||||  || ||||||||      
T  1846570 acctatccttggagtatttgggtgtagtggcatccatcttgttacagcagcagatcatttgtgaaacaccaagagcgtaggcaagttgaacatgttcatt 1846669  T
Q  174 ggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagagcacaatcagcgtgggatgacccattaatcatgtta 273  Q
    |||| |||||| |||| ||||||||  ||||||| ||||||| ||||| || | ||||||||  ||||| ||||| | |||||  ||  | ||||||||     
T  1846670 ggtctgaccattcttacaaaaaccagcttcaaaaccaccaggtgtagagtcaatgataagaacggcacagtcagcttcggatgctccggtgatcatgttc 1846769  T
Q  274 tgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaattctgcatagaaacgtcaattgtgatacctctttcac 373  Q
    | |||||||||||| ||||| | ||||||||||| |||| ||  |  ||| | ||| ||||| |||   | ||||| |||||||||||||||||||||||    
T  1846770 ttaatgaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggttgtctcaaacttccatagagaaatgtcaattgtgatacctctttcac 1846869  T
Q  374 gctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgtt 425  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  1846870 gctcggccttgagcttgtcaagcacccaagcatacttgaatgaacgcctgtt 1846921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 4787349 - 4787274
Alignment:
Q  342 catagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaa 417  Q
    |||||||| ||||||||||  |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  4787349 catagaaatgtcaattgtggcacctctttcacgctcacccttgagtttgtcaagcacccaagcatacttgaatgaa 4787274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 418
Target Start/End: Original strand, 4620026 - 4620212
Alignment:
Q  232 agaagagcacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgttt 331  Q
    |||| |||||| ||||| |||||||  ||  | |||||||| | ||||||||| || ||||| | ||||||||||| |||| || ||   || | ||| |    
T  4620026 agaacagcacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttgtct 4620125  T
Q  332 caaaattctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaac 418  Q
    |||| ||   || ||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  4620126 caaacttggacagagaaatgtcgattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatatttgaatgaac 4620212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 413
Target Start/End: Original strand, 4297922 - 4297990
Alignment:
Q  345 agaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaa 413  Q
    ||||| ||||||||||  |||||||||| | |||||  ||||||||||||| |||||||||||||||||    
T  4297922 agaaatgtcaattgtggcacctctttcatggtcagctttgagtttgtcaagtacccaagcatacttgaa 4297990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 139 - 413
Target Start/End: Original strand, 16349382 - 16349656
Alignment:
Q  139 acaccaagagcggaggcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagag 238  Q
    |||||||||| | | ||| | ||||||||||||||| || ||||||  || |||| |||   | ||||| || ||||||| ||||| |||||||||||||    
T  16349382 acaccaagagagtaagcatggagagcatgttcacggatctgaccattattggaaataccggctccaaaaccagcaggagtggaatcaacgataagaagag 16349481  T
Q  239 cacaatcagcgtgggatgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatgatagtgtagcagcggtttggtgtttcaaaatt 338  Q
    |||||||||| ||||||| |||| |||||||||| | |||||||||||| ||||| | |||||||||||||||| ||| |   || | ||| ||||||||    
T  16349482 cacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggttgtctcaaaatt 16349581  T
Q  339 ctgcatagaaacgtcaattgtgatacctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaa 413  Q
    |  |||||||  ||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||    
T  16349582 caacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtcaagaacccacgcatacttgaa 16349656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 16349120 - 16349151
Alignment:
Q  19 caaccaagttatctccctcaaaaccagagatg 50  Q
    ||||||||||||||||||||||||||||||||    
T  16349120 caaccaagttatctccctcaaaaccagagatg 16349151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 428
Target Start/End: Complemental strand, 7528907 - 7528843
Alignment:
Q  364 cctctttcacgctcagccatgagtttgtcaagcacccaagcatacttgaatgaacgcctgttcat 428  Q
    |||||||||||||||||| | ||||||||||| ||||| |||||||||||||||||| |||||||    
T  7528907 cctctttcacgctcagccttaagtttgtcaagaacccatgcatacttgaatgaacgcttgttcat 7528843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 307
Target Start/End: Complemental strand, 7519746 - 7519593
Alignment:
Q  154 gcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagagcacaatcagcgtggg 253  Q
    |||||||||||||| ||||||||| | ||||||||||| | ||||  ||||||| ||||||  || || || | |||||| | |||||||||||| ||||    
T  7519746 gcaagaagagcatgctcacgggtctgtccatccttagagataccagcttcaaaaccaccagtggtggagtcaatgataaggacagcacaatcagcctggg 7519647  T
Q  254 atgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatga 307  Q
    | |  ||| |||||||||| |  |||||||| | |||||| |  ||||||||||    
T  7519646 aggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatga 7519593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 307
Target Start/End: Complemental strand, 7529117 - 7528964
Alignment:
Q  154 gcaagaagagcatgttcacgggtccgaccatccttagaaaaaccattttcaaaagcaccaggagtagaatcgacgataagaagagcacaatcagcgtggg 253  Q
    ||||||||||| || ||||||||| | ||||||||||| | ||||  ||||||| ||||||  || || || | |||||| |  ||||||||||| ||||    
T  7529117 gcaagaagagcgtgctcacgggtctgtccatccttagagataccagcttcaaaaccaccagtggtggagtcaatgataagcacggcacaatcagcctggg 7529018  T
Q  254 atgacccattaatcatgttatgaatgaaatccctatgtccagcggcatcaatga 307  Q
    | |  ||| |||||||||| |  |||||||| | |||||| |  ||||||||||    
T  7529017 aggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatga 7528964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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