View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13850_low_14 (Length: 441)

Name: NF13850_low_14
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13850_low_14
NF13850_low_14
[»] chr5 (13 HSPs)
chr5 (147-233)||(24109511-24109597)
chr5 (16-70)||(16199026-16199080)
chr5 (16-78)||(16799556-16799618)
chr5 (16-82)||(38869593-38869659)
chr5 (16-70)||(27923897-27923951)
chr5 (16-63)||(9364113-9364160)
chr5 (16-82)||(40389765-40389831)
chr5 (22-66)||(7670743-7670787)
chr5 (16-70)||(15480229-15480283)
chr5 (16-70)||(19523105-19523159)
chr5 (35-84)||(28822576-28822625)
chr5 (17-70)||(34756615-34756668)
chr5 (30-70)||(31881604-31881644)
[»] chr3 (16 HSPs)
chr3 (16-90)||(53507117-53507191)
chr3 (16-82)||(44708282-44708348)
chr3 (16-70)||(43207474-43207528)
chr3 (19-84)||(48156940-48157005)
chr3 (16-70)||(50939468-50939522)
chr3 (16-70)||(9878919-9878973)
chr3 (16-70)||(34290874-34290928)
chr3 (16-70)||(54407391-54407445)
chr3 (16-65)||(48720530-48720579)
chr3 (16-70)||(50258734-50258788)
chr3 (17-70)||(27078819-27078872)
chr3 (17-70)||(27084616-27084669)
chr3 (17-70)||(36716276-36716329)
chr3 (17-70)||(38681348-38681401)
chr3 (17-70)||(54619454-54619507)
chr3 (30-70)||(3954866-3954906)
[»] chr4 (19 HSPs)
chr4 (16-82)||(16844827-16844893)
chr4 (16-84)||(37777459-37777527)
chr4 (16-70)||(24969254-24969308)
chr4 (16-66)||(40089340-40089390)
chr4 (23-82)||(2790981-2791040)
chr4 (16-70)||(32128404-32128458)
chr4 (16-82)||(34027388-34027454)
chr4 (16-66)||(38352489-38352539)
chr4 (16-70)||(54083478-54083532)
chr4 (16-82)||(16882627-16882693)
chr4 (16-83)||(19498312-19498379)
chr4 (16-65)||(35463958-35464007)
chr4 (33-82)||(35780573-35780622)
chr4 (16-71)||(45560704-45560759)
chr4 (16-70)||(10431442-10431496)
chr4 (33-82)||(54779441-54779490)
chr4 (17-70)||(55255092-55255145)
chr4 (16-68)||(1105445-1105497)
chr4 (30-70)||(5128997-5129037)
[»] chr7 (12 HSPs)
chr7 (16-82)||(47985202-47985268)
chr7 (16-82)||(38415108-38415174)
chr7 (16-70)||(48984077-48984131)
chr7 (16-83)||(24525918-24525985)
chr7 (16-81)||(25010254-25010319)
chr7 (16-70)||(19691909-19691964)
chr7 (16-67)||(20091514-20091565)
chr7 (16-70)||(10329643-10329697)
chr7 (16-72)||(23551305-23551361)
chr7 (16-70)||(28749593-28749647)
chr7 (30-70)||(12596443-12596483)
chr7 (34-82)||(26253069-26253117)
[»] chr6 (12 HSPs)
chr6 (16-82)||(17353759-17353825)
chr6 (16-82)||(20711952-20712018)
chr6 (16-70)||(27788922-27788976)
chr6 (16-82)||(19986966-19987032)
chr6 (16-82)||(28075588-28075654)
chr6 (23-70)||(235466-235513)
chr6 (16-71)||(23070889-23070944)
chr6 (311-349)||(4289278-4289316)
chr6 (17-70)||(13727650-13727703)
chr6 (30-70)||(19741237-19741277)
chr6 (30-70)||(21280345-21280385)
chr6 (30-70)||(27314778-27314818)
[»] chr2 (10 HSPs)
chr2 (16-82)||(26715931-26715997)
chr2 (16-70)||(9045844-9045898)
chr2 (16-70)||(27506975-27507029)
chr2 (16-68)||(24410250-24410302)
chr2 (16-61)||(8327488-8327533)
chr2 (16-70)||(10762799-10762853)
chr2 (17-70)||(4505691-4505744)
chr2 (16-70)||(3952911-3952965)
chr2 (17-70)||(3155015-3155068)
chr2 (17-70)||(6964804-6964857)
[»] chr1 (16 HSPs)
chr1 (16-82)||(27559447-27559513)
chr1 (16-83)||(1367111-1367178)
chr1 (16-83)||(40502024-40502091)
chr1 (16-82)||(9173255-9173321)
chr1 (16-70)||(13913716-13913770)
chr1 (20-70)||(44895479-44895529)
chr1 (16-66)||(19955547-19955597)
chr1 (16-70)||(17168781-17168835)
chr1 (33-83)||(5027991-5028041)
chr1 (17-70)||(51607674-51607727)
chr1 (16-83)||(23181710-23181777)
chr1 (16-70)||(14146217-14146271)
chr1 (17-71)||(27906949-27907003)
chr1 (17-70)||(44655551-44655604)
chr1 (34-82)||(12037589-12037637)
chr1 (30-70)||(41697293-41697333)
[»] scaffold0039 (1 HSPs)
scaffold0039 (16-82)||(106379-106445)
[»] chr8 (8 HSPs)
chr8 (16-70)||(42600596-42600650)
chr8 (20-82)||(10917194-10917256)
chr8 (16-70)||(23606855-23606909)
chr8 (16-82)||(23798495-23798561)
chr8 (16-70)||(20003876-20003930)
chr8 (17-70)||(2952473-2952526)
chr8 (17-70)||(3048774-3048827)
chr8 (17-70)||(5860996-5861049)
[»] scaffold0027 (1 HSPs)
scaffold0027 (16-70)||(4161-4215)
[»] scaffold0070 (1 HSPs)
scaffold0070 (30-70)||(1023-1063)


Alignment Details
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 24109511 - 24109597
Alignment:
Q  147 aagtgttgcatatggctattgttgagggattcaatcatatttgccaagtctgaatttgcctcaacattttgaaacaacatgtctttg 233  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  24109511 aagtgttgcatatggctattattgagggattcaatcatatttgctaagtctgaatttgcctcaaaattttgaaacaacatgtctttg 24109597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 16199026 - 16199080
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16199026 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 16199080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 16799556 - 16799618
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccggg 78  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  16799556 ttgaggcccatgactgagggaggcctagctctattgagctgtttgcaccccctcaaagccggg 16799618  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 38869593 - 38869659
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||  ||||||||||    
T  38869593 ttgaggcccatgactgagggaggcccagctttgttgagctgtttgcaccccctcatggccgggcctg 38869659  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 27923951 - 27923897
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  27923951 ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctca 27923897  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 9364160 - 9364113
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcac 63  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9364160 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 9364113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 40389765 - 40389831
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||||||| ||||  ||||||||||    
T  40389765 ttgaggtccatgactgagggaggcccaggtctgttgagctgtttgcacccgctcagggccgggcctg 40389831  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 7670787 - 7670743
Alignment:
Q  22 cccatgactgagggaggcccagctctgttgatctgtttgcacccc 66  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    
T  7670787 cccatgactgagggaggcccaactctgttgagctgtttgcacccc 7670743  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 15480229 - 15480283
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  15480229 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 15480283  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 19523159 - 19523105
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  19523159 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 19523105  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 28822576 - 28822625
Alignment:
Q  35 gaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctgct 84  Q
    |||||||| ||||||||| ||||||||||||||||| | |||||| ||||    
T  28822576 gaggcccaactctgttgagctgtttgcaccccctcagaaccgggcatgct 28822625  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 34756615 - 34756668
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  34756615 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 34756668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 31881604 - 31881644
Alignment:
Q  30 tgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  31881604 tgagggaggcccagctcgtttgagctgtttgcaccccctca 31881644  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 53507117 - 53507191
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctgcttctatc 90  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  53507117 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgcttctatc 53507191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 44708348 - 44708282
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  44708348 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagagccgggcctg 44708282  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 43207474 - 43207528
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43207474 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 43207528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 48157005 - 48156940
Alignment:
Q  19 aggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctgct 84  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||  ||||||||||||    
T  48157005 aggcccatgattgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgct 48156940  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 50939468 - 50939522
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  50939468 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctca 50939522  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 9878919 - 9878973
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||    
T  9878919 ttgaggcccatgattaagggaggcccagctctgttgagctgtttgcaccccctca 9878973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 34290874 - 34290928
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  34290874 ttgaggcccatgcctgagggaggcccaactctgttgagctgtttgcaccccctca 34290928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 54407391 - 54407445
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  54407391 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcacctcctca 54407445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 48720530 - 48720579
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccc 65  Q
    ||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  48720530 ttgaggcccatgactgagggaagctcagctctgttgagctgtttgcaccc 48720579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 50258734 - 50258788
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  50258734 ttgaggcccatccttgagggaggcccagctcatttgagctgtttgcaccccctca 50258788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 27078819 - 27078872
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  27078819 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 27078872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 27084616 - 27084669
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  27084616 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 27084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 36716276 - 36716329
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  36716276 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 36716329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 38681348 - 38681401
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  38681348 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 38681401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 54619454 - 54619507
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  54619454 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 54619507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 3954866 - 3954906
Alignment:
Q  30 tgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  3954866 tgagggaggcccagctcgtttgagctgtttgcaccccctca 3954906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 16844893 - 16844827
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  16844893 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 16844827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 37777459 - 37777527
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctgct 84  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  37777459 ttgaggcccatgattgagggaggtccagctctgttgagctgtttgcaccccctcaaggccgggcctgct 37777527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 24969308 - 24969254
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24969308 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 24969254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 40089390 - 40089340
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcacccc 66  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40089390 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 40089340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 2790981 - 2791040
Alignment:
Q  23 ccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||    
T  2790981 ccatgactgagggagacccagctctgttgagctgtttgcaccccctcagagtcgggcctg 2791040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 32128458 - 32128404
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  32128458 ttgaggtccataactgagggaggcccagctctgttgagctgtttgcaccccctca 32128404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 34027454 - 34027388
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    |||||||||||||||||||||| |||||||||||||| | |||||||| |||||| |||| ||||||    
T  34027454 ttgaggcccatgactgagggagacccagctctgttgagcagtttgcactccctcagagccaggcctg 34027388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 38352489 - 38352539
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcacccc 66  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  38352489 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcacccc 38352539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 54083478 - 54083532
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  54083478 ttgaggcccatgactgagggatgcccagctctattgagctgtttgcaccccctca 54083532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 16882627 - 16882693
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||| ||||||| ||||| ||||||||||||||| ||||||||||| ||||| | |||||||||    
T  16882627 ttgaggctcatgactaagggaagcccagctctgttgagctgtttgcacctcctcagaaccgggcctg 16882693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 19498379 - 19498312
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctgc 83  Q
    ||||||||||||| || |||||||||||| ||||||| || |||||||||| |||  |||||||||||    
T  19498379 ttgaggcccatgattgggggaggcccagcactgttgagctatttgcaccccgtcagggccgggcctgc 19498312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 35464007 - 35463958
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccc 65  Q
    |||| ||||||| ||| |||||||||||||||||||| ||||||||||||    
T  35464007 ttgatgcccatggctgggggaggcccagctctgttgagctgtttgcaccc 35463958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 35780573 - 35780622
Alignment:
Q  33 gggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    |||||||||||||| ||||| ||||||||||||||||  |||||||||||    
T  35780573 gggaggcccagctcggttgagctgtttgcaccccctcggagccgggcctg 35780622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 45560704 - 45560759
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaa 71  Q
    |||||||||||   |||||||||||||||||  |||| ||||||||||||||||||    
T  45560704 ttgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctcaa 45560759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 10431442 - 10431496
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  10431442 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 10431496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 54779490 - 54779441
Alignment:
Q  33 gggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    |||||||||||||| ||||| |||||||||| ||||||  ||||||||||    
T  54779490 gggaggcccagctcggttgagctgtttgcactccctcagggccgggcctg 54779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 55255145 - 55255092
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  55255145 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 55255092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 1105497 - 1105445
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccct 68  Q
    |||||||||||   |||||||||||||||||  |||| |||||||||||||||    
T  1105497 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 1105445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 5128997 - 5129037
Alignment:
Q  30 tgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  5128997 tgagggaggcccagctcgtttgagctgtttgcaccccctca 5129037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 47985202 - 47985268
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  47985202 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 47985268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 38415108 - 38415174
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||||    
T  38415108 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcatcccctcagagccgggcctg 38415174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 48984077 - 48984131
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48984077 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 48984131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 24525918 - 24525985
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctgc 83  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||  || ||||||||    
T  24525918 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcaccccctcagggctgggcctgc 24525985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 25010319 - 25010254
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcct 81  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||  |||||||||    
T  25010319 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgtaccccctcagggccgggcct 25010254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 19691964 - 19691909
Alignment:
Q  16 ttgaggcccat-gactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  19691964 ttgaggcccattgactgagggaggcccagctctgttgagctgtttgcaccccctca 19691909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 20091514 - 20091565
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccc 67  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  20091514 ttgaggcccatgactgagggaggcccagctctattgagctgtttgcaccccc 20091565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 10329643 - 10329697
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||||||| || ||| ||||||| |||||||||||||||||    
T  10329643 ttgaggcccatgactgagggagacctagcgctgttgaactgtttgcaccccctca 10329697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 23551305 - 23551361
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaa 72  Q
    ||||||||||||| ||||||||| ||| |||| |||| |||||||||||||||||||    
T  23551305 ttgaggcccatgattgagggaggtccaactctattgagctgtttgcaccccctcaaa 23551361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 28749647 - 28749593
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  28749647 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 28749593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 12596443 - 12596483
Alignment:
Q  30 tgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  12596443 tgagggaggcccagctcgtttgagctgtttgcaccccctca 12596483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 26253117 - 26253069
Alignment:
Q  34 ggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||| |  || |||||||||||||||||||||||| ||||    
T  26253117 ggaggcccagctcagaagagctgtttgcaccccctcaaagccggccctg 26253069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 17353825 - 17353759
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  17353825 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 17353759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 20711952 - 20712018
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  ||||||||||    
T  20711952 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggccgggcctg 20712018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 27788922 - 27788976
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27788922 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 27788976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 19987032 - 19986966
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |  ||||||||||    
T  19987032 ttgaggcccataattgagggaggcccagctctgttgagctgtttgcacccccttagggccgggcctg 19986966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 28075654 - 28075588
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    |||| |||||||||||| ||| ||| ||||||||||| ||||||||||||||||| |||||||||||    
T  28075654 ttgaagcccatgactgaaggaagcctagctctgttgagctgtttgcaccccctcagagccgggcctg 28075588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 235466 - 235513
Alignment:
Q  23 ccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||    
T  235466 ccatgactgagggaggcccagctctgttaagctgtttgcaccccctca 235513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 23070889 - 23070944
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaa 71  Q
    |||||||||||   |||||||||||||||||  |||| ||||||||||||||||||    
T  23070889 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaa 23070944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 4289316 - 4289278
Alignment:
Q  311 atttgtaaattcgtcatttaaactaacaaaactagcaat 349  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  4289316 atttgtaaattcgtcggttaaactaacaaaactagcaat 4289278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 13727650 - 13727703
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  13727650 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctca 13727703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 19741237 - 19741277
Alignment:
Q  30 tgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  19741237 tgagggaggcccagctcgtttgagctgtttgcaccccctca 19741277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 21280385 - 21280345
Alignment:
Q  30 tgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  21280385 tgagggaggcccagctcgtttgagctgtttgcaccccctca 21280345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 27314778 - 27314818
Alignment:
Q  30 tgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  27314778 tgagggaggcccagctcgtttgagctgtttgcaccccctca 27314818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 26715997 - 26715931
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  26715997 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 26715931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 9045898 - 9045844
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9045898 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 9045844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 27506975 - 27507029
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27506975 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 27507029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 24410302 - 24410250
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccct 68  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24410302 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccct 24410250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 8327533 - 8327488
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgc 61  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  8327533 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgc 8327488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 10762799 - 10762853
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||||| |||||||    
T  10762799 ttgaggcccatgattgagggaagcccagctctgttgagctgtttgcatcccctca 10762853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 4505744 - 4505691
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||| | |||||||||||||||||  |||| |||||||||||||||||    
T  4505744 tgaggcccatcattgagggaggcccagctcgtttgagctgtttgcaccccctca 4505691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 3952965 - 3952911
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  3952965 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3952911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 3155068 - 3155015
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  3155068 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 6964857 - 6964804
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  6964857 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 6964804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 27559513 - 27559447
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  27559513 ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctcaaaaccgggcctg 27559447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 1367111 - 1367178
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctgc 83  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||| ||||||    
T  1367111 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgtgcctgc 1367178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 40502024 - 40502091
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctgc 83  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||||||||    
T  40502024 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctgc 40502091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 9173255 - 9173321
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||    
T  9173255 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggccgggcctg 9173321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 13913716 - 13913770
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13913716 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 13913770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 44895529 - 44895479
Alignment:
Q  20 ggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44895529 ggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 44895479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 19955597 - 19955547
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcacccc 66  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  19955597 ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcacccc 19955547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 17168835 - 17168781
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||    
T  17168835 ttgaggcccatgactgagggaggccaagctctattgagctgtttgcatcccctca 17168781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 5027991 - 5028041
Alignment:
Q  33 gggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctgc 83  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||| ||||||    
T  5027991 gggaggcccagctcggttgagctgtttgcaccccctcaaaaccgagcctgc 5028041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 51607674 - 51607727
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||| ||||| |||||||||||| |||| ||||||||||| |||||    
T  51607674 tgaggcccatgattgaggaaggcccagctctattgagctgtttgcaccacctca 51607727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 23181777 - 23181710
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctgc 83  Q
    ||||||||||| | || ||| |||||||||| ||||| |||||||||||||||||  ||||| |||||    
T  23181777 ttgaggcccatcattgggggtggcccagctcggttgagctgtttgcaccccctcagggccggccctgc 23181710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 14146271 - 14146217
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  14146271 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 14146217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 27906949 - 27907003
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaa 71  Q
    ||||||||||   |||||||||||||||||  |||| ||||||||||||||||||    
T  27906949 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaa 27907003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 44655604 - 44655551
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  44655604 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 44655551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 12037637 - 12037589
Alignment:
Q  34 ggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||| || || |||||||||||||||||||| ||| ||||    
T  12037637 ggaggcccagctcagtagagctgtttgcaccccctcaaagacggccctg 12037589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 41697293 - 41697333
Alignment:
Q  30 tgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  41697293 tgagggaggcccagctcgtttgagctgtttgcaccccctca 41697333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 106445 - 106379
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  ||||||||||    
T  106445 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccctctcagggccgggcctg 106379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 42600650 - 42600596
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42600650 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 42600596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 10917256 - 10917194
Alignment:
Q  20 ggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  10917256 ggcccatgagtgagggaggcccagctctgttgagctgtttgcaccccctcaaggacgggcctg 10917194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 23606855 - 23606909
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  23606855 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctca 23606909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 23798495 - 23798561
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctcaaagccgggcctg 82  Q
    |||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| ||| ||||||    
T  23798495 ttgaggcccatgactgagggaggcccagctttgttgagctgttcgcaccccctcaaggccaggcctg 23798561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 20003876 - 20003930
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  20003876 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 20003930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 2952473 - 2952526
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  2952473 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 2952526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 3048774 - 3048827
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  3048774 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3048827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 5860996 - 5861049
Alignment:
Q  17 tgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||   |||||||||||||||||  |||| |||||||||||||||||    
T  5860996 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 5861049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 4215 - 4161
Alignment:
Q  16 ttgaggcccatgactgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||||||| ||||    
T  4215 ttgaggcccatgactggaggaggcccagctctgttgagctgtttgcaccctctca 4161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 1063 - 1023
Alignment:
Q  30 tgagggaggcccagctctgttgatctgtttgcaccccctca 70  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  1063 tgagggaggcccagctcgtttgagctgtttgcaccccctca 1023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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