View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_low_16 (Length: 384)
Name: NF13850_low_16
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 181 - 366
Target Start/End: Complemental strand, 6241677 - 6241492
Alignment:
| Q |
181 |
aataaaattgaatgactttaacattataattatcttatcacctgtttttagaagatagctttgaaagtaaaattcttaggtgctccttnnnnnnngtaaa |
280 |
Q |
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| T |
6241677 |
aataaaaatgaatgactttaacattataattatcttatcacctgttttttgaagatagctttgaaagtaaaattcttaggtgctccttaaaaaaagtaaa |
6241578 |
T |
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| Q |
281 |
tttcttaggtgatagttttgcctgtgatagagactaacttttaaaaagaaagaaaacaactttacaagtctcaagtatccacttac |
366 |
Q |
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| T |
6241577 |
tttcttaggtgatagttttgcctgtgatagagactaatttttaaaaagaaaaaaaacaactttacaagtctcaagtatccacttac |
6241492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 181 - 366
Target Start/End: Complemental strand, 6212750 - 6212565
Alignment:
| Q |
181 |
aataaaattgaatgactttaacattataattatcttatcacctgtttttagaagatagctttgaaagtaaaattcttaggtgctccttnnnnnnngtaaa |
280 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6212750 |
aataaaaatgaatgactttaacattataattatcttatcacctgttttttgaagatagctttgaaagtaaaattcttaggtgctccttaaaaaaagtaaa |
6212651 |
T |
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| Q |
281 |
tttcttaggtgatagttttgcctgtgatagagactaacttttaaaaagaaagaaaacaactttacaagtctcaagtatccacttac |
366 |
Q |
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| T |
6212650 |
tttcttaggtgatagttttgcctgtgataaagactaatttttaaaaagaaaaaaaacaactttacaagtctcaagtatccacttac |
6212565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 6241800 - 6241687
Alignment:
| Q |
155 |
tatcggtttaatatttccattttgcaaataaaattgaatgactttaacattataattatcttatcacctgtttttagaagatagctttgaaagtaaaatt |
254 |
Q |
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| T |
6241800 |
tatcggtttaatatttccattttgcaaataaaaatgaatgactttaacattataattatcttatcacctgttttttgaagatagctttgaaagtaaaatt |
6241701 |
T |
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| Q |
255 |
cttaggtgctcctt |
268 |
Q |
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|||||||||||||| |
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| T |
6241700 |
cttaggtgctcctt |
6241687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 8368742 - 8368659
Alignment:
| Q |
9 |
gaagaatatcaagggatggaaggaaaaatgtctttctcgtgccgggaaggaaactttaatcaaggcagtagctcaagcaatccc |
92 |
Q |
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| T |
8368742 |
gaagaagatcaaaggctggaaagagaaatgtctctcccgtgctgggaaagaaactttaatcaaagcagttgctcaggctatccc |
8368659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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