View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13850_low_18 (Length: 378)
Name: NF13850_low_18
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13850_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 24415715 - 24415353
Alignment:
| Q |
1 |
acaaatttgttggaactcacttctttgaagggagttatgcatcaatcaacttgtatattattaaatggccagtagtataatccatcccttaaatatctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24415715 |
acaaatttgttggaactcacttctttgaagggagttatgcatcaatcaacttgtatattattaaatggccagtagtataatccatcccttaaatatctta |
24415616 |
T |
|
| Q |
101 |
atccctatctaacaactctgaaaccaccactattacattacatgaaccaatgtacaaccccaaataaagtaagcattattaaggattaataacatcatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24415615 |
atccctatctaacaactctgaaaccaccactattacattacatgaaccaatgtacaaccccaaataaagtaagcattattaaggattaataacaccatta |
24415516 |
T |
|
| Q |
201 |
accttttcctctaattttctcacttatgattccttcaaatgatccaacaaatccaaccatggtgacaaggaagcaagcaaagctaaaaatccttagaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24415515 |
accttttcctctaattttctcacttatgattccttcaaatgatccaacaaatccaaccatggtgacaaggaagcaagcaaagctaaaaatccttagaaca |
24415416 |
T |
|
| Q |
301 |
atccattttctagtccaagctccaactttcttctgtacaaagtacatttcaactgggaaatat |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24415415 |
atccattttctagtccaagctccaactttcttctgtacaaagtacatttcaactgggaaatat |
24415353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 27 - 363
Target Start/End: Original strand, 24418840 - 24419172
Alignment:
| Q |
27 |
gaagggagttatgcatcaatcaacttgtatattattaaatggccagtagtataatccatcccttaaatatcttaatccctatctaacaactctgaaacca |
126 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
24418840 |
gaagcgagttatgcatcaatcaacttgtatatgattaaatggcttgtagtataatccatcccttaaatatcttaatgcctatctaacaactctgaaa--a |
24418937 |
T |
|
| Q |
127 |
ccactattacattacatgaaccaatgtacaaccccaaataaagtaagcattattaaggattaataacatcattaaccttttcctctaattttctcactta |
226 |
Q |
| |
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|| || |||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
24418938 |
ccg-tag-acattacatgaaccaacgtacagccccaaataaagtaagcattactaagtattaataacatcattaaccttttccactaattttctctctta |
24419035 |
T |
|
| Q |
227 |
tgattccttcaaatgatccaacaaatccaaccatggtgacaaggaagcaagcaaagctaaaaatccttagaacaatccattttctagtccaagctccaac |
326 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24419036 |
tgataccttcaaatgatccaacaaatccaaccattgtgacaagaaagcaagcaaagctaaaaatccttagagcaatccattttctagtccaagctccaac |
24419135 |
T |
|
| Q |
327 |
tttcttctgtacaaagtacatttcaactgggaaatat |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
24419136 |
tttcttctgtacaaagtacatttcaactgggaaatat |
24419172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 139 - 363
Target Start/End: Complemental strand, 24380542 - 24380319
Alignment:
| Q |
139 |
tacatgaaccaatgtacaaccccaaataaagtaagcattattaaggattaataacatcattaaccttttcctctaattttctcacttatgattccttcaa |
238 |
Q |
| |
|
||||||||||||| |||||||| | |||||||| |||||||||| |||||| |||||||||||||| |||| ||||||| |||||||||||||| |
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| T |
24380542 |
tacatgaaccaatctacaaccc-atataaagtacccattattaagtggtaataatgtcattaaccttttcaactaagtttctcatgtatgattccttcaa |
24380444 |
T |
|
| Q |
239 |
atgatccaacaaatccaaccatggtgacaaggaagcaagcaaagctaaaaatccttagaacaatccattttctagtccaagctccaactttcttctgtac |
338 |
Q |
| |
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||||||||| ||||| | ||| || ||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
24380443 |
atgatccaattaatcccatcattgtaacaagaaagcaagcaaagctaaatatcctgagaacaatccattttttagtccaagctccaattttcttctgtac |
24380344 |
T |
|
| Q |
339 |
aaagtacatttcaactgggaaatat |
363 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
24380343 |
aaagtacatttcaactgggaaatat |
24380319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 209 - 363
Target Start/End: Complemental strand, 24402691 - 24402537
Alignment:
| Q |
209 |
ctctaattttctcacttatgattccttcaaatgatccaacaaatccaaccatggtgacaaggaagcaagcaaagctaaaaatccttagaacaatccattt |
308 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
24402691 |
ctctaattttctcacgtacgattccttcaaatgacccaacaaatccaactattgtgacaagaaagcaagcaaagctaaaaatccttagaacaatccatct |
24402592 |
T |
|
| Q |
309 |
tctagtccaagctccaactttcttctgtacaaagtacatttcaactgggaaatat |
363 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
24402591 |
cctagtccaagctccaattttattctgtacaaagtacatttcaactgggaaatat |
24402537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 363
Target Start/End: Complemental strand, 42363224 - 42363077
Alignment:
| Q |
216 |
tttctcacttatgattccttcaaatgatccaacaaatccaaccatggtgacaaggaagcaagcaaagctaaaaatccttagaacaatccattttctagtc |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | || | || || || | |||| ||||||||||| |||| ||||||||||||||| ||| | |
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| T |
42363224 |
tttctcacttatgattccttcaagtgatccaacaagactcacaactgtcaccagaaggcaaacaaagctaaaagtcctaagaacaatccattttgtagac |
42363125 |
T |
|
| Q |
316 |
caagctccaactttcttctgtacaaagtacatttcaactgggaaatat |
363 |
Q |
| |
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|||||| ||| ||| ||||||||||| ||||| || || ||||||||| |
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| T |
42363124 |
caagcttcaattttattctgtacaaaatacatctctaccgggaaatat |
42363077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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