View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13850_low_19 (Length: 349)

Name: NF13850_low_19
Description: NF13850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13850_low_19
NF13850_low_19
[»] chr2 (3 HSPs)
chr2 (12-331)||(16752081-16752400)
chr2 (80-327)||(16756566-16756813)
chr2 (12-78)||(16756839-16756905)
[»] chr7 (3 HSPs)
chr7 (95-310)||(7970150-7970365)
chr7 (80-315)||(37576741-37576976)
chr7 (80-156)||(37586325-37586401)
[»] chr1 (2 HSPs)
chr1 (36-310)||(17583127-17583395)
chr1 (36-310)||(17591034-17591302)
[»] chr5 (12 HSPs)
chr5 (12-310)||(28474487-28474779)
chr5 (43-315)||(32558078-32558344)
chr5 (84-317)||(32709809-32710042)
chr5 (43-310)||(32762627-32762888)
chr5 (36-310)||(32767527-32767795)
chr5 (12-282)||(32739745-32740009)
chr5 (86-315)||(32656315-32656544)
chr5 (94-315)||(32662210-32662431)
chr5 (12-310)||(25469202-25469494)
chr5 (82-225)||(32857961-32858104)
chr5 (148-307)||(32652122-32652281)
chr5 (238-282)||(32857916-32857960)
[»] chr4 (1 HSPs)
chr4 (80-282)||(21524205-21524407)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 16752400 - 16752081
Alignment:
Q  12 tatactcggactcggaagcatttcgaccaaagcagcaaatattgactgcattccccaaaagcgtagtgatagtactattaatgagaataaatagtttgcc 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16752400 tatactcggactcggaagcatttggaccaaagcagcaaatattgactgcattccccaaaagcgtagtgatagtactattaatgagaataaatagtttgcc 16752301  T
Q  112 atcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgttta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16752300 atcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgttta 16752201  T
Q  212 ttgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgcttcg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16752200 ttgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgcttcg 16752101  T
Q  312 tcttctgactgtaatctatt 331  Q
    ||||||||||||||||||||    
T  16752100 tcttctgactgtaatctatt 16752081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 80 - 327
Target Start/End: Complemental strand, 16756813 - 16756566
Alignment:
Q  80 atagtactattaatgagaataaatagtttgccatcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccat 179  Q
    |||||||||||| |||||||||||| |||||||  |  |||||||||||||| |||  | |||||||||||||||||||||||||  |||||    ||||    
T  16756813 atagtactattattgagaataaatactttgccactacgtttctcttgaagaacaatgacttcatcatcagacttcaaggagacaagaaaagaaaatccat 16756714  T
Q  180 aagaaaatttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataaca 279  Q
    || |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  16756713 aataaaaattgatttgagaatcctcgtgtttatggctgaaatggtcggacaacacctctgatgaagcaacaaagtcacaacctgaaagggggcaataaca 16756614  T
Q  280 tgggacatagatgcatttttcttcatgcttcgtcttctgactgtaatc 327  Q
    ||| ||||||||||||| ||||||||||||| |||||||| |||||||    
T  16756613 tggcacatagatgcattcttcttcatgcttcctcttctgaatgtaatc 16756566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 16756905 - 16756839
Alignment:
Q  12 tatactcggactcggaagcatttcgaccaaagcagcaaatattgactgcattccccaaaagcgtagt 78  Q
    ||||||||||| | |||||| || |||||||||| ||||||||||||||||| ||||||||| ||||    
T  16756905 tatactcggacacagaagcagttggaccaaagcaacaaatattgactgcatttcccaaaagcatagt 16756839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 95 - 310
Target Start/End: Original strand, 7970150 - 7970365
Alignment:
Q  95 agaataaatagtttgccatcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgattt 194  Q
    |||||||||||||| || |||| || ||||||||||| ||| |  ||| ||| |||| |||||||||||||||| || |||||||||||||||| |||||    
T  7970150 agaataaatagttttccgtcattttcctcttgaagaacaatggtttcaccattagacatcaaggagacaatgaaggagtgaccataagaaaattcgattt 7970249  T
Q  195 gagaatcctcgtgtttattgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgca 294  Q
    |||||||| | ||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||| || |||||||| |||||||||||    
T  7970250 gagaatccccatgtttatggctgaaatggttggacaacacttctgatgacgcaacaaagtcacaacctgaaaggggacagtaacatggtacatagatgca 7970349  T
Q  295 tttttcttcatgcttc 310  Q
    || |||||||||||||    
T  7970350 ttcttcttcatgcttc 7970365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 80 - 315
Target Start/End: Complemental strand, 37576976 - 37576741
Alignment:
Q  80 atagtactattaatgagaataaatagtttgccatcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccat 179  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||||||||| ||| |  ||||||| |||||||||||||||||| |  ||  ||||||    
T  37576976 atagtactattattgagaataaatagtttgccaacattattctcttgaagaacaatagtttcatcattagacttcaaggagacaataacggacagaccat 37576877  T
Q  180 aagaaaatttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataaca 279  Q
    ||||||| ||| | ||||||||| ||||||||| ||||||||| || |||||||| |||||||| |||||||| |||||| |||  |  ||||| |||||    
T  37576876 aagaaaacttggtctgagaatccccgtgtttatggctgaaatgcttagacaacacttctgatgatgcaacaaagtcacaatctggcagagggcagtaaca 37576777  T
Q  280 tgggacatagatgcatttttcttcatgcttcgtctt 315  Q
     ||  ||| |||||||| ||||||||| ||| ||||    
T  37576776 cggctcatggatgcattgttcttcatggttcatctt 37576741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 37586401 - 37586325
Alignment:
Q  80 atagtactattaatgagaataaatagtttgccatcatatttctcttgaagaataattgcatcatcatcagacttcaa 156  Q
    |||| |||||||||||||||||||||||| | ||||| |||||||| ||||| |||    ||||||| |||||||||    
T  37586401 atagcactattaatgagaataaatagttttctatcatttttctcttaaagaagaatactttcatcattagacttcaa 37586325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 310
Target Start/End: Complemental strand, 17583395 - 17583127
Alignment:
Q  36 gaccaaagcagcaaatattgactgcattccccaaaagcgtagtgatagtactattaatgagaataaatagtttgccatcatatttctcttgaagaataat 135  Q
    |||||| |||||||| |||||||||||| |||||||||      ||| | |||||| |||||||||||||||| ||||||| || ||||||||||| |||    
T  17583395 gaccaatgcagcaaagattgactgcatttcccaaaagc------atacttctattattgagaataaatagtttaccatcattttcctcttgaagaacaat 17583302  T
Q  136 tgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacc 235  Q
     |  ||||||| |||||||| ||||||| |||| || |||||||||||||||||||||||||||||  | ||||||| |||||| |||||||||||||      
T  17583301 ggtttcatcattagacttcatggagacagtgaaggactgaccataagaaaatttgatttgagaatcaccatgtttatggctgaagtggttggacaacaat 17583202  T
Q  236 tctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgcttc 310  Q
    ||||| || ||| |||| ||||| ||||||| |||||| | |||||| || ||||||||||||||||||||||||    
T  17583201 tctgacgatgcagcaaagtcacatcctgaaagggggcagtcacatggtacgtagatgcatttttcttcatgcttc 17583127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 36 - 310
Target Start/End: Complemental strand, 17591302 - 17591034
Alignment:
Q  36 gaccaaagcagcaaatattgactgcattccccaaaagcgtagtgatagtactattaatgagaataaatagtttgccatcatatttctcttgaagaataat 135  Q
    |||||| |||||||| |||||||||||| ||||||||||||||       |||||| |||||||||||||||| ||||||| || ||||||||||| |||    
T  17591302 gaccaatgcagcaaagattgactgcatttcccaaaagcgtagtt------ctattattgagaataaatagtttaccatcattttcctcttgaagaacaat 17591209  T
Q  136 tgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacc 235  Q
        ||||||| |||||||||||||||| |||| || | |||||||||||||||||||  ||||||| | |||||||  ||||||||||||||||||||     
T  17591208 aatttcatcattagacttcaaggagacagtgaaggagtaaccataagaaaatttgattatagaatccccatgtttatgcctgaaatggttggacaacact 17591109  T
Q  236 tctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgcttc 310  Q
    |||||||| ||| |||| ||||| ||||||| |||||| |||||| | || |||| ||||| |||||||||||||    
T  17591108 tctgatgatgcagcaaagtcacatcctgaaagggggcagtaacatagtacgtagacgcattcttcttcatgcttc 17591034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 28474779 - 28474487
Alignment:
Q  12 tatactcggactcggaagcatttcgaccaaagcagcaaatattgactgcattccccaaaagcgtagtgatagtactattaatgagaataaatagtttgcc 111  Q
    ||||||||||||| ||||  ||  |||||| |||||||||||||||| |||| |||||||| || ||       |||||| |||||||||||||||||||    
T  28474779 tatactcggactcagaagagttaggaccaatgcagcaaatattgactccatttcccaaaagtgtggtt------ctattattgagaataaatagtttgcc 28474686  T
Q  112 atcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgttta 211  Q
     |||  || ||||||||||| ||| |  ||||||| ||||||||| |||||| |||| || ||||||||||||||||||||| |||||||| | ||||||    
T  28474685 ctcagtttcctcttgaagaacaatggtttcatcattagacttcaaagagacattgaaggagtgaccataagaaaatttgattcgagaatccccatgttta 28474586  T
Q  212 ttgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgcttc 310  Q
    | ||||||||||||||||||||| |||||||| ||| |||| |||||||| ||||  ||||| |||||||| |  ||||||||||  ||||||||||||    
T  28474585 tggctgaaatggttggacaacacttctgatgatgcagcaaagtcacaaccagaaagagggcagtaacatggaaagtagatgcattcgtcttcatgcttc 28474487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 43 - 315
Target Start/End: Original strand, 32558078 - 32558344
Alignment:
Q  43 gcagcaaatattgactgcattccccaaaagcgtagtgatagtactattaatgagaataaatagtttgccatcatatttctcttgaagaataattgcatca 142  Q
    ||||| ||||||||||||||| |||| ||||      |||||||||||| ||||| |||||||||| ||||||| || ||||||||||| |   || |||    
T  32558078 gcagctaatattgactgcatttcccagaagc------atagtactattattgagagtaaatagtttcccatcattttcctcttgaagaacagcagcttca 32558171  T
Q  143 tcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacctctgatg 242  Q
    |||| ||| ||||| |||||| |||| || |||||||||||||||| |||| |||| ||| ||||||||| | ||||||||||||||||||| ||| |||    
T  32558172 tcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccgtgtttatggttgaaatggttggacaacacttctaatg 32558271  T
Q  243 aggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgcttcgtctt 315  Q
    ||||||||||||||||||||  || ||| || |||||||| ||||||||||||| ||||||||| ||| ||||    
T  32558272 aggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttcctctt 32558344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 84 - 317
Target Start/End: Complemental strand, 32710042 - 32709809
Alignment:
Q  84 tactattaatgagaataaatagtttgccatcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataaga 183  Q
    |||||||| |||| ||||| ||||||||  || ||| ||||||||||| ||| || || |||| | |||| |||||||||||||| || |||||||||||    
T  32710042 tactattattgaggataaacagtttgccgacacattcctcttgaagaacaatggcttcgtcattaaactttaaggagacaatgaaggagtgaccataaga 32709943  T
Q  184 aaatttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatggg 283  Q
    |||| || ||||| |||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||| || ||||||||     
T  32709942 aaatgtgctttgaaaatccttgtgtttatggctgaaatgattggacaacacttctgatgaggcaacaaagtcacaacctgaaaggggacagtaacatggc 32709843  T
Q  284 acatagatgcatttttcttcatgcttcgtcttct 317  Q
    ||||| || |||| ||||||||||||| ||||||    
T  32709842 acatacatacattcttcttcatgcttcttcttct 32709809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 310
Target Start/End: Complemental strand, 32762888 - 32762627
Alignment:
Q  43 gcagcaaatattgactgcattccccaaaagcgtagtgatagtactattaatgagaataaatagtttgccatcatatttctcttgaagaataattgcatca 142  Q
    ||||||||||||||||||||| || ||||| |||||       |||||| |||||||||| ||||||||||||| || ||||||||| | ||| |  |||    
T  32762888 gcagcaaatattgactgcatttcctaaaagtgtagtt------ctattattgagaataaacagtttgccatcattttcctcttgaaggacaatggtttca 32762795  T
Q  143 tcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacctctgatg 242  Q
    |||| ||||||||||||||||||||| ||   |||||||||||||||||| |||||||||  |||||||| ||||| ||||||||||||||| |||||||    
T  32762794 tcattagacttcaaggagacaatgaaggagccaccataagaaaatttgatgtgagaatccctgtgtttatggctgacatggttggacaacacttctgatg 32762695  T
Q  243 aggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgcttc 310  Q
    | ||| |||| ||||||||||||| |||||| |||||| |  | ||||||||||  ||||||||||||    
T  32762694 atgcagcaaagtcacaacctgaaagggggcagtaacatagttcgtagatgcattcctcttcatgcttc 32762627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 36 - 310
Target Start/End: Complemental strand, 32767795 - 32767527
Alignment:
Q  36 gaccaaagcagcaaatattgactgcattccccaaaagcgtagtgatagtactattaatgagaataaatagtttgccatcatatttctcttgaagaataat 135  Q
    |||||| ||||||||||| ||||||||| || |||||       |||||||||||| |||||||||||||||||||||||| || ||| ||||||| |||    
T  32767795 gaccaatgcagcaaatatagactgcatttcctaaaagt------atagtactattattgagaataaatagtttgccatcattttcctcctgaagaacaat 32767702  T
Q  136 tgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacc 235  Q
     || | |||||  ||||| |||||||||||||| || |||||||||  ||||||||||||||||| |  ||||||   |||||||||||||||||||||     
T  32767701 ggcttgatcattggactttaaggagacaatgaaggagtgaccataattaaatttgatttgagaattccggtgttttcggctgaaatggttggacaacact 32767602  T
Q  236 tctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgcttc 310  Q
    |||||||  ||| ||||  |||||||| |||||||||| |||||| | || || |||||||  ||||||||||||    
T  32767601 tctgatgttgcagcaaagccacaacctaaaatggggcagtaacatagtacgtatatgcattcgtcttcatgcttc 32767527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 32740009 - 32739745
Alignment:
Q  12 tatactcggactcggaagcatttcgaccaaagcagcaaatattgactgcattccccaaaagcgtagtgatagtactattaatgagaataaatagtttgcc 111  Q
    ||||||| ||||| ||||| | | |||||||||||||||||||||| ||||| || || | ||||||      ||||||| ||||||||||||||||| |    
T  32740009 tatactcagactcagaagcgtctggaccaaagcagcaaatattgacagcatttcctaacaacgtagt------actattattgagaataaatagtttgtc 32739916  T
Q  112 atcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgttta 211  Q
    ||||| || |||| |||||| ||| |  ||||||| |||||||||||||| || ||| |||||||||| ||||||||||||||| |||||| | ||||||    
T  32739915 atcattttcctctcgaagaacaatggtttcatcattagacttcaaggagataacgaaggattgaccattagaaaatttgatttgcgaatccccatgttta 32739816  T
Q  212 ttgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgg 282  Q
    | || ||||||  | |||||||| ||||||||  ||||||| ||||| ||||||| ||| || ||||||||    
T  32739815 tggcagaaatgcatagacaacacttctgatgattcaacaaagtcacatcctgaaaagggacagtaacatgg 32739745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 86 - 315
Target Start/End: Original strand, 32656315 - 32656544
Alignment:
Q  86 ctattaatgagaataaatagtttgccatcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaa 185  Q
    |||||| ||||||||||||||||||||| |  || |||||||| || ||| |  ||||| | |||||||||||||||| |||| || | |||||||||||    
T  32656315 ctattattgagaataaatagtttgccataactttcctcttgaaaaacaatggtttcatccttagacttcaaggagacattgaaggagtcaccataagaaa 32656414  T
Q  186 atttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggac 285  Q
    |||||||||||||||||| |||||||| ||||||||| || |||||||| || ||||| ||||||||  |||||| |||||| || || ||||| || ||    
T  32656415 atttgatttgagaatccttgtgtttatcgctgaaatgcttagacaacacttcggatgatgcaacaaagccacaacttgaaataggacagtaacagggcac 32656514  T
Q  286 atagatgcatttttcttcatgcttcgtctt 315  Q
    || |||||||| || |||||| ||| ||||    
T  32656515 atggatgcattctttttcatgattcctctt 32656544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 94 - 315
Target Start/End: Original strand, 32662210 - 32662431
Alignment:
Q  94 gagaataaatagtttgccatcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatt 193  Q
    |||||||||||||||||||| |  || |||||||| || ||| |  ||||||| |||||| | | ||||||| || || ||||||||||||||||||||     
T  32662210 gagaataaatagtttgccataagtttcctcttgaaaaacaatggtttcatcattagacttgatgtagacaattaaggagtgaccataagaaaatttgata 32662309  T
Q  194 tgagaatcctcgtgtttattgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgc 293  Q
    ||||||||| ||||||||| ||||||||| || |||||||| |||||||| |||||||| ||||| | |||||  |||||  ||||||| |||| |||||    
T  32662310 tgagaatccccgtgtttatcgctgaaatgcttagacaacacttctgatgatgcaacaaagtcacagcttgaaacagggcagcaacatggcacatggatgc 32662409  T
Q  294 atttttcttcatgcttcgtctt 315  Q
    ||| ||||||||||||| ||||    
T  32662410 attcttcttcatgcttcctctt 32662431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 25469494 - 25469202
Alignment:
Q  12 tatactcggactcggaagcatttcgaccaaagcagcaaatattgactgcattccccaaaagcgtagtgatagtactattaatgagaataaatagtttgcc 111  Q
    |||||| |||||| ||||  ||| |||||| |||||||| |||||| || || ||||||| |      |||||| ||||  |||| ||||||| || |||    
T  25469494 tatacttggactcagaagattttggaccaatgcagcaaacattgaccgcgtttcccaaaaac------atagtaatatttttgaggataaataattggcc 25469401  T
Q  112 atcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgttta 211  Q
    ||| | |||||||||||||| ||  |  ||||||| ||| ||||||||||||||||| || ||| |||||||||||||  ||||||||||| |||||||     
T  25469400 atcgtttttctcttgaagaacaacggtttcatcattagaattcaaggagacaatgaaggagtgatcataagaaaatttattttgagaatccccgtgtttt 25469301  T
Q  212 ttgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgcttc 310  Q
    | ||| |||||| |||||| ||| |||||||| ||||| || ||||||||||||| |||||| ||||||||  ||||||| |||| || ||||||||||    
T  25469300 tggctaaaatggctggacagcacttctgatgatgcaacgaagtcacaacctgaaaaggggcagtaacatggctcatagatacattctttttcatgcttc 25469202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 32858104 - 32857961
Alignment:
Q  82 agtactattaatgagaataaatagtttgccatcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataa 181  Q
    |||||||||| |||||||||||||||||||||||| || || |||||||| ||| |  ||| | | ||||||||||||||||||||| || ||||||||     
T  32858104 agtactattattgagaataaatagtttgccatcattttccttttgaagaacaatggtttcaactttagacttcaaggagacaatgaaggagtgaccatac 32858005  T
Q  182 gaaaatttgatttgagaatcctcgtgtttattgctgaaatggtt 225  Q
    ||||||| |||||||||||||  |||||||  ||||||||||||    
T  32858004 gaaaattggatttgagaatccctgtgtttaaagctgaaatggtt 32857961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 32652122 - 32652281
Alignment:
Q  148 agacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacctctgatgaggca 247  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||   ||||||||||||||||| ||  ||| ||| |||||||| |||    
T  32652122 agacttcaaggagacaatgaaggaatgaccataaaaaaatttgatttgagtatccctttgtttattgctgaaatgcttatacagcacttctgatgatgca 32652221  T
Q  248 acaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgc 307  Q
    ||||| | ||||| || ||  ||||| ||||||||  ||| |||||||| || |||||||    
T  32652222 acaaagtgacaacttggaacagggcagtaacatggcgcatggatgcattctttttcatgc 32652281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 32857960 - 32857916
Alignment:
Q  238 tgatgaggcaacaaaatcacaacctgaaatggggcaataacatgg 282  Q
    |||||| |||||||| ||||||||||||| |||||| ||||||||    
T  32857960 tgatgatgcaacaaagtcacaacctgaaagggggcagtaacatgg 32857916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 80 - 282
Target Start/End: Complemental strand, 21524407 - 21524205
Alignment:
Q  80 atagtactattaatgagaataaatagtttgccatcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccat 179  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||| |  ||| | | ||||||||||||||||||||| || || ||||    
T  21524407 atagtactattattgagaataaatagtttgccatcattttcctcttgaagaacaatggtttcaactttagacttcaaggagacaatgaaggagtggccat 21524308  T
Q  180 aagaaaatttgatttgagaatcctcgtgtttattgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataaca 279  Q
    | |||||||||||||||||||||  |||||||  |||||||||||| |||||||| |||||||| |||||||| ||||||||||||| |||||| |||||    
T  21524307 acgaaaatttgatttgagaatccctgtgtttaaagctgaaatggtttgacaacacttctgatgatgcaacaaagtcacaacctgaaagggggcagtaaca 21524208  T
Q  280 tgg 282  Q
    |||    
T  21524207 tgg 21524205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University